Hb_000934_110

Information

Type -
Description -
Location Contig934: 82042-85738
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07270g
description POPTRDRAFT_551355; hypothetical protein
nr
ID XP_012066080.1
description PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
swissprot
ID F4I037
description Protein trichome berefringence-like 7 OS=Arabidopsis thaliana GN=TBL7 PE=3 SV=1
trembl
ID A9PDE1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07270g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62929: 82543-85881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_110 0.0 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
2 Hb_000200_350 0.0923438529 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
3 Hb_000172_350 0.0997262112 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
4 Hb_000589_110 0.1031994539 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
5 Hb_005250_010 0.1047547199 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
6 Hb_007769_040 0.1084693898 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_003462_060 0.1108893691 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
8 Hb_000347_040 0.1110738241 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
9 Hb_025477_050 0.1119825071 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_004735_020 0.1125269546 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
11 Hb_000479_170 0.1166007856 - - chaperone clpb, putative [Ricinus communis]
12 Hb_022250_010 0.1168744025 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
13 Hb_002053_050 0.1170529182 - - Kinesin heavy chain, putative [Ricinus communis]
14 Hb_000107_250 0.1188945787 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
15 Hb_001220_050 0.1193148693 - - DNA-damage-inducible protein f, putative [Ricinus communis]
16 Hb_010344_030 0.1217421783 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001876_040 0.1219155874 - - PREDICTED: mucin-5B [Jatropha curcas]
18 Hb_003682_070 0.1224630817 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
19 Hb_006355_020 0.1226706319 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
20 Hb_000922_060 0.1249659117 - - kinesin light chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000934_110 Hb_000934_110 Hb_000200_350 Hb_000200_350 Hb_000934_110--Hb_000200_350 Hb_000172_350 Hb_000172_350 Hb_000934_110--Hb_000172_350 Hb_000589_110 Hb_000589_110 Hb_000934_110--Hb_000589_110 Hb_005250_010 Hb_005250_010 Hb_000934_110--Hb_005250_010 Hb_007769_040 Hb_007769_040 Hb_000934_110--Hb_007769_040 Hb_003462_060 Hb_003462_060 Hb_000934_110--Hb_003462_060 Hb_006006_060 Hb_006006_060 Hb_000200_350--Hb_006006_060 Hb_010344_030 Hb_010344_030 Hb_000200_350--Hb_010344_030 Hb_009020_040 Hb_009020_040 Hb_000200_350--Hb_009020_040 Hb_001157_230 Hb_001157_230 Hb_000200_350--Hb_001157_230 Hb_024184_010 Hb_024184_010 Hb_000200_350--Hb_024184_010 Hb_000172_350--Hb_005250_010 Hb_022250_010 Hb_022250_010 Hb_000172_350--Hb_022250_010 Hb_001801_020 Hb_001801_020 Hb_000172_350--Hb_001801_020 Hb_000562_050 Hb_000562_050 Hb_000172_350--Hb_000562_050 Hb_006355_020 Hb_006355_020 Hb_000172_350--Hb_006355_020 Hb_000589_110--Hb_007769_040 Hb_013405_080 Hb_013405_080 Hb_000589_110--Hb_013405_080 Hb_000589_110--Hb_005250_010 Hb_025477_050 Hb_025477_050 Hb_000589_110--Hb_025477_050 Hb_007192_090 Hb_007192_090 Hb_000589_110--Hb_007192_090 Hb_000555_020 Hb_000555_020 Hb_000589_110--Hb_000555_020 Hb_005250_010--Hb_013405_080 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110 Hb_007769_040--Hb_025477_050 Hb_000345_370 Hb_000345_370 Hb_007769_040--Hb_000345_370 Hb_000479_170 Hb_000479_170 Hb_007769_040--Hb_000479_170 Hb_007769_040--Hb_013405_080 Hb_001220_050 Hb_001220_050 Hb_007769_040--Hb_001220_050 Hb_000482_050 Hb_000482_050 Hb_003462_060--Hb_000482_050 Hb_000260_710 Hb_000260_710 Hb_003462_060--Hb_000260_710 Hb_002600_070 Hb_002600_070 Hb_003462_060--Hb_002600_070 Hb_022693_130 Hb_022693_130 Hb_003462_060--Hb_022693_130 Hb_001396_240 Hb_001396_240 Hb_003462_060--Hb_001396_240 Hb_000529_130 Hb_000529_130 Hb_003462_060--Hb_000529_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.10204 7.63321 10.6837 15.7133 10.0385 7.83362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.7528 4.40785 3.18496 4.17687 24.8361

CAGE analysis