Hb_002498_140

Information

Type -
Description -
Location Contig2498: 79328-83018
Sequence    

Annotation

kegg
ID sly:101252154
description peroxisomal membrane protein PMP22-like
nr
ID XP_010317659.1
description PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
swissprot
ID Q9ZS51
description Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1
trembl
ID M1A262
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401005074 PE=4 SV=1
Gene Ontology
ID GO:0016021
description peroxisomal membrane protein pmp22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25987: 79330-82700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_140 0.0 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
2 Hb_000136_110 0.0715797153 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
3 Hb_010931_070 0.0920392844 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
4 Hb_000088_190 0.093287232 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001604_120 0.0950832508 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
6 Hb_000046_040 0.0954904905 - - conserved hypothetical protein [Ricinus communis]
7 Hb_044662_060 0.09624824 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
8 Hb_004109_120 0.0984617647 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
9 Hb_007821_020 0.0992867043 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
10 Hb_002874_180 0.0993879039 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
11 Hb_000416_200 0.1005160304 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
12 Hb_006816_090 0.1031545441 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
13 Hb_001975_090 0.1032267809 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
14 Hb_171900_040 0.1038128327 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
15 Hb_000340_130 0.1045837019 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
16 Hb_000108_050 0.1047133073 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
17 Hb_000207_300 0.1057957701 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
18 Hb_011618_050 0.1064837472 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
19 Hb_000007_390 0.1066624527 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
20 Hb_005975_010 0.1076654566 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002498_140 Hb_002498_140 Hb_000136_110 Hb_000136_110 Hb_002498_140--Hb_000136_110 Hb_010931_070 Hb_010931_070 Hb_002498_140--Hb_010931_070 Hb_000088_190 Hb_000088_190 Hb_002498_140--Hb_000088_190 Hb_001604_120 Hb_001604_120 Hb_002498_140--Hb_001604_120 Hb_000046_040 Hb_000046_040 Hb_002498_140--Hb_000046_040 Hb_044662_060 Hb_044662_060 Hb_002498_140--Hb_044662_060 Hb_001584_140 Hb_001584_140 Hb_000136_110--Hb_001584_140 Hb_001005_030 Hb_001005_030 Hb_000136_110--Hb_001005_030 Hb_000373_080 Hb_000373_080 Hb_000136_110--Hb_000373_080 Hb_002811_270 Hb_002811_270 Hb_000136_110--Hb_002811_270 Hb_001269_230 Hb_001269_230 Hb_000136_110--Hb_001269_230 Hb_170416_010 Hb_170416_010 Hb_010931_070--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_010931_070--Hb_001025_120 Hb_004052_080 Hb_004052_080 Hb_010931_070--Hb_004052_080 Hb_000567_070 Hb_000567_070 Hb_010931_070--Hb_000567_070 Hb_005000_170 Hb_005000_170 Hb_010931_070--Hb_005000_170 Hb_000144_070 Hb_000144_070 Hb_010931_070--Hb_000144_070 Hb_171900_040 Hb_171900_040 Hb_000088_190--Hb_171900_040 Hb_000757_030 Hb_000757_030 Hb_000088_190--Hb_000757_030 Hb_000088_190--Hb_010931_070 Hb_003363_070 Hb_003363_070 Hb_000088_190--Hb_003363_070 Hb_000088_190--Hb_000046_040 Hb_000181_240 Hb_000181_240 Hb_001604_120--Hb_000181_240 Hb_000015_100 Hb_000015_100 Hb_001604_120--Hb_000015_100 Hb_000445_140 Hb_000445_140 Hb_001604_120--Hb_000445_140 Hb_000416_200 Hb_000416_200 Hb_001604_120--Hb_000416_200 Hb_000365_100 Hb_000365_100 Hb_001604_120--Hb_000365_100 Hb_011618_050 Hb_011618_050 Hb_000046_040--Hb_011618_050 Hb_000649_230 Hb_000649_230 Hb_000046_040--Hb_000649_230 Hb_000046_040--Hb_010931_070 Hb_001136_070 Hb_001136_070 Hb_000046_040--Hb_001136_070 Hb_000869_020 Hb_000869_020 Hb_000046_040--Hb_000869_020 Hb_000690_160 Hb_000690_160 Hb_000046_040--Hb_000690_160 Hb_005463_130 Hb_005463_130 Hb_044662_060--Hb_005463_130 Hb_044662_060--Hb_000365_100 Hb_001501_080 Hb_001501_080 Hb_044662_060--Hb_001501_080 Hb_000072_090 Hb_000072_090 Hb_044662_060--Hb_000072_090 Hb_001486_170 Hb_001486_170 Hb_044662_060--Hb_001486_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5767 5.39509 29.1584 13.9278 14.8172 13.5278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.88589 8.82115 13.0253 9.42613 16.6353

CAGE analysis