Hb_171900_040

Information

Type -
Description -
Location Contig171900: 15261-19818
Sequence    

Annotation

kegg
ID rcu:RCOM_1609100
description Import inner membrane translocase subunit tim21, mitochondrial precursor, putative
nr
ID XP_012083676.1
description PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
swissprot
ID Q1G3L1
description Probable mitochondrial import inner membrane translocase subunit TIM21 OS=Arabidopsis thaliana GN=TIM21 PE=1 SV=1
trembl
ID A0A067JY77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14608 PE=4 SV=1
Gene Ontology
ID GO:0005744
description probable mitochondrial import inner membrane translocase subunit tim21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16097: 15264-19807 , PASA_asmbl_16098: 15582-18376 , PASA_asmbl_16099: 18888-19281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_040 0.0 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
2 Hb_000088_190 0.0803817548 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010931_070 0.081757357 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
4 Hb_000757_030 0.0912581957 - - radical sam protein, putative [Ricinus communis]
5 Hb_007821_020 0.1003587201 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
6 Hb_001824_080 0.1005443133 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
7 Hb_002498_140 0.1038128327 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
8 Hb_001025_120 0.1058753824 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
9 Hb_000012_270 0.1063647625 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
10 Hb_002929_060 0.1069968636 - - conserved hypothetical protein [Ricinus communis]
11 Hb_170416_010 0.1081999153 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
12 Hb_000300_180 0.1091286969 - - transcription initiation factor brf1, putative [Ricinus communis]
13 Hb_000254_100 0.1112733223 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
14 Hb_003363_070 0.1113650535 - - -
15 Hb_004100_050 0.1119555121 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
16 Hb_000416_200 0.1141933034 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
17 Hb_000567_070 0.1157032439 - - autophagy protein, putative [Ricinus communis]
18 Hb_000085_190 0.1168781888 - - FtsZ1 protein [Manihot esculenta]
19 Hb_000144_070 0.1175885492 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000046_040 0.11842868 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_171900_040 Hb_171900_040 Hb_000088_190 Hb_000088_190 Hb_171900_040--Hb_000088_190 Hb_010931_070 Hb_010931_070 Hb_171900_040--Hb_010931_070 Hb_000757_030 Hb_000757_030 Hb_171900_040--Hb_000757_030 Hb_007821_020 Hb_007821_020 Hb_171900_040--Hb_007821_020 Hb_001824_080 Hb_001824_080 Hb_171900_040--Hb_001824_080 Hb_002498_140 Hb_002498_140 Hb_171900_040--Hb_002498_140 Hb_000088_190--Hb_000757_030 Hb_000088_190--Hb_010931_070 Hb_003363_070 Hb_003363_070 Hb_000088_190--Hb_003363_070 Hb_000088_190--Hb_002498_140 Hb_000046_040 Hb_000046_040 Hb_000088_190--Hb_000046_040 Hb_170416_010 Hb_170416_010 Hb_010931_070--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_010931_070--Hb_001025_120 Hb_004052_080 Hb_004052_080 Hb_010931_070--Hb_004052_080 Hb_000567_070 Hb_000567_070 Hb_010931_070--Hb_000567_070 Hb_005000_170 Hb_005000_170 Hb_010931_070--Hb_005000_170 Hb_000144_070 Hb_000144_070 Hb_010931_070--Hb_000144_070 Hb_000300_180 Hb_000300_180 Hb_000757_030--Hb_000300_180 Hb_005542_130 Hb_005542_130 Hb_000757_030--Hb_005542_130 Hb_000254_100 Hb_000254_100 Hb_000757_030--Hb_000254_100 Hb_000304_070 Hb_000304_070 Hb_000757_030--Hb_000304_070 Hb_000757_030--Hb_003363_070 Hb_000757_030--Hb_010931_070 Hb_007821_020--Hb_000567_070 Hb_007821_020--Hb_000254_100 Hb_003225_020 Hb_003225_020 Hb_007821_020--Hb_003225_020 Hb_000115_280 Hb_000115_280 Hb_007821_020--Hb_000115_280 Hb_031284_010 Hb_031284_010 Hb_007821_020--Hb_031284_010 Hb_003186_020 Hb_003186_020 Hb_007821_020--Hb_003186_020 Hb_004109_120 Hb_004109_120 Hb_001824_080--Hb_004109_120 Hb_001824_080--Hb_000254_100 Hb_004109_260 Hb_004109_260 Hb_001824_080--Hb_004109_260 Hb_001824_080--Hb_000304_070 Hb_004339_040 Hb_004339_040 Hb_001824_080--Hb_004339_040 Hb_001824_080--Hb_007821_020 Hb_000136_110 Hb_000136_110 Hb_002498_140--Hb_000136_110 Hb_002498_140--Hb_010931_070 Hb_001604_120 Hb_001604_120 Hb_002498_140--Hb_001604_120 Hb_002498_140--Hb_000046_040 Hb_044662_060 Hb_044662_060 Hb_002498_140--Hb_044662_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.02332 4.16518 14.8813 4.06151 6.24602 4.83949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.27102 5.48122 8.10965 4.70713 7.41655

CAGE analysis