Hb_003363_070

Information

Type -
Description -
Location Contig3363: 88832-90443
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35218: 88835-89605 , PASA_asmbl_35219: 89607-90502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003363_070 0.0 - - -
2 Hb_000757_030 0.0789278268 - - radical sam protein, putative [Ricinus communis]
3 Hb_009296_070 0.0831616338 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
4 Hb_010931_070 0.0859599976 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
5 Hb_170416_010 0.0876415521 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
6 Hb_006132_090 0.0888783518 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
7 Hb_000304_070 0.0901889044 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
8 Hb_005588_080 0.0907995545 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
9 Hb_001900_140 0.0912709512 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
10 Hb_001025_120 0.0913837144 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
11 Hb_000088_190 0.0915215627 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000207_300 0.0922425467 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
13 Hb_004100_050 0.0939861615 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
14 Hb_000028_520 0.0955041217 - - hypothetical protein L484_025125 [Morus notabilis]
15 Hb_003430_050 0.0965837154 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
16 Hb_003098_070 0.0967523191 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
17 Hb_003861_060 0.0968050319 - - PREDICTED: treacle protein [Jatropha curcas]
18 Hb_001824_080 0.0969236547 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
19 Hb_007002_020 0.0970675687 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
20 Hb_002687_120 0.0975050256 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003363_070 Hb_003363_070 Hb_000757_030 Hb_000757_030 Hb_003363_070--Hb_000757_030 Hb_009296_070 Hb_009296_070 Hb_003363_070--Hb_009296_070 Hb_010931_070 Hb_010931_070 Hb_003363_070--Hb_010931_070 Hb_170416_010 Hb_170416_010 Hb_003363_070--Hb_170416_010 Hb_006132_090 Hb_006132_090 Hb_003363_070--Hb_006132_090 Hb_000304_070 Hb_000304_070 Hb_003363_070--Hb_000304_070 Hb_000300_180 Hb_000300_180 Hb_000757_030--Hb_000300_180 Hb_005542_130 Hb_005542_130 Hb_000757_030--Hb_005542_130 Hb_000254_100 Hb_000254_100 Hb_000757_030--Hb_000254_100 Hb_000757_030--Hb_000304_070 Hb_000757_030--Hb_010931_070 Hb_005588_080 Hb_005588_080 Hb_009296_070--Hb_005588_080 Hb_003861_060 Hb_003861_060 Hb_009296_070--Hb_003861_060 Hb_010578_080 Hb_010578_080 Hb_009296_070--Hb_010578_080 Hb_062226_130 Hb_062226_130 Hb_009296_070--Hb_062226_130 Hb_003878_090 Hb_003878_090 Hb_009296_070--Hb_003878_090 Hb_000365_230 Hb_000365_230 Hb_009296_070--Hb_000365_230 Hb_010931_070--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_010931_070--Hb_001025_120 Hb_004052_080 Hb_004052_080 Hb_010931_070--Hb_004052_080 Hb_000567_070 Hb_000567_070 Hb_010931_070--Hb_000567_070 Hb_005000_170 Hb_005000_170 Hb_010931_070--Hb_005000_170 Hb_000144_070 Hb_000144_070 Hb_010931_070--Hb_000144_070 Hb_001761_120 Hb_001761_120 Hb_170416_010--Hb_001761_120 Hb_001226_150 Hb_001226_150 Hb_170416_010--Hb_001226_150 Hb_007765_100 Hb_007765_100 Hb_170416_010--Hb_007765_100 Hb_007007_120 Hb_007007_120 Hb_170416_010--Hb_007007_120 Hb_003531_080 Hb_003531_080 Hb_170416_010--Hb_003531_080 Hb_005167_010 Hb_005167_010 Hb_006132_090--Hb_005167_010 Hb_001900_140 Hb_001900_140 Hb_006132_090--Hb_001900_140 Hb_006132_090--Hb_003878_090 Hb_002157_120 Hb_002157_120 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020 Hb_003119_060 Hb_003119_060 Hb_006132_090--Hb_003119_060 Hb_010863_050 Hb_010863_050 Hb_000304_070--Hb_010863_050 Hb_001623_270 Hb_001623_270 Hb_000304_070--Hb_001623_270 Hb_001824_080 Hb_001824_080 Hb_000304_070--Hb_001824_080 Hb_000304_070--Hb_005588_080 Hb_000304_070--Hb_000254_100 Hb_000207_300 Hb_000207_300 Hb_000304_070--Hb_000207_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4871 4.95932 13.2987 6.33943 3.79332 4.70574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.69154 6.26281 8.26493 7.3204 9.87603

CAGE analysis