Hb_000088_190

Information

Type -
Description -
Location Contig88: 259138-268908
Sequence    

Annotation

kegg
ID rcu:RCOM_1147840
description hypothetical protein
nr
ID XP_002533585.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9T5R6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1147840 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61390: 259164-259409 , PASA_asmbl_61393: 265677-268662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_171900_040 0.0803817548 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
3 Hb_000757_030 0.0817909548 - - radical sam protein, putative [Ricinus communis]
4 Hb_010931_070 0.0912284506 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
5 Hb_003363_070 0.0915215627 - - -
6 Hb_002498_140 0.093287232 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
7 Hb_000046_040 0.1015310665 - - conserved hypothetical protein [Ricinus communis]
8 Hb_107879_010 0.1019533309 - - phosphoglycerate mutase, putative [Ricinus communis]
9 Hb_002876_220 0.1046721107 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
10 Hb_000207_300 0.1047289901 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
11 Hb_000890_130 0.1052610448 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
12 Hb_000003_780 0.1066120965 - - hexokinase [Manihot esculenta]
13 Hb_001824_080 0.1069768892 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
14 Hb_000300_180 0.1084078602 - - transcription initiation factor brf1, putative [Ricinus communis]
15 Hb_002687_120 0.1091117815 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
16 Hb_007002_020 0.1091377927 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
17 Hb_000869_020 0.1093358949 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
18 Hb_003029_070 0.1121726733 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_003119_060 0.1129714612 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
20 Hb_001975_090 0.1140753674 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]

Gene co-expression network

sample Hb_000088_190 Hb_000088_190 Hb_171900_040 Hb_171900_040 Hb_000088_190--Hb_171900_040 Hb_000757_030 Hb_000757_030 Hb_000088_190--Hb_000757_030 Hb_010931_070 Hb_010931_070 Hb_000088_190--Hb_010931_070 Hb_003363_070 Hb_003363_070 Hb_000088_190--Hb_003363_070 Hb_002498_140 Hb_002498_140 Hb_000088_190--Hb_002498_140 Hb_000046_040 Hb_000046_040 Hb_000088_190--Hb_000046_040 Hb_171900_040--Hb_010931_070 Hb_171900_040--Hb_000757_030 Hb_007821_020 Hb_007821_020 Hb_171900_040--Hb_007821_020 Hb_001824_080 Hb_001824_080 Hb_171900_040--Hb_001824_080 Hb_171900_040--Hb_002498_140 Hb_000300_180 Hb_000300_180 Hb_000757_030--Hb_000300_180 Hb_005542_130 Hb_005542_130 Hb_000757_030--Hb_005542_130 Hb_000254_100 Hb_000254_100 Hb_000757_030--Hb_000254_100 Hb_000304_070 Hb_000304_070 Hb_000757_030--Hb_000304_070 Hb_000757_030--Hb_003363_070 Hb_000757_030--Hb_010931_070 Hb_170416_010 Hb_170416_010 Hb_010931_070--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_010931_070--Hb_001025_120 Hb_004052_080 Hb_004052_080 Hb_010931_070--Hb_004052_080 Hb_000567_070 Hb_000567_070 Hb_010931_070--Hb_000567_070 Hb_005000_170 Hb_005000_170 Hb_010931_070--Hb_005000_170 Hb_000144_070 Hb_000144_070 Hb_010931_070--Hb_000144_070 Hb_009296_070 Hb_009296_070 Hb_003363_070--Hb_009296_070 Hb_003363_070--Hb_010931_070 Hb_003363_070--Hb_170416_010 Hb_006132_090 Hb_006132_090 Hb_003363_070--Hb_006132_090 Hb_003363_070--Hb_000304_070 Hb_000136_110 Hb_000136_110 Hb_002498_140--Hb_000136_110 Hb_002498_140--Hb_010931_070 Hb_001604_120 Hb_001604_120 Hb_002498_140--Hb_001604_120 Hb_002498_140--Hb_000046_040 Hb_044662_060 Hb_044662_060 Hb_002498_140--Hb_044662_060 Hb_011618_050 Hb_011618_050 Hb_000046_040--Hb_011618_050 Hb_000649_230 Hb_000649_230 Hb_000046_040--Hb_000649_230 Hb_000046_040--Hb_010931_070 Hb_001136_070 Hb_001136_070 Hb_000046_040--Hb_001136_070 Hb_000869_020 Hb_000869_020 Hb_000046_040--Hb_000869_020 Hb_000690_160 Hb_000690_160 Hb_000046_040--Hb_000690_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83902 1.4038 7.62758 2.67722 2.98487 2.00614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75603 3.10294 4.11294 2.72132 4.50924

CAGE analysis