Hb_004109_260

Information

Type -
Description -
Location Contig4109: 253422-260734
Sequence    

Annotation

kegg
ID pop:POPTR_0001s42990g
description DNA repair protein recA
nr
ID KDP37702.1
description hypothetical protein JCGZ_06843 [Jatropha curcas]
swissprot
ID Q39199
description DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana GN=RECA PE=2 SV=1
trembl
ID A0A067KNM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06843 PE=3 SV=1
Gene Ontology
ID GO:0003697
description dna repair protein reca homolog chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_260 0.0 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
2 Hb_001824_080 0.0679689506 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
3 Hb_004339_040 0.0830922929 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
4 Hb_000802_130 0.0846147091 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
5 Hb_000613_120 0.0848077988 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
6 Hb_001438_010 0.086074083 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
7 Hb_000880_070 0.0902797404 - - gamma-tubulin complex component, putative [Ricinus communis]
8 Hb_002025_250 0.0911589459 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
9 Hb_000237_200 0.0928128522 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
10 Hb_004109_120 0.0958106405 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
11 Hb_012438_030 0.0983024699 - - PREDICTED: protein sym-1 [Jatropha curcas]
12 Hb_000300_470 0.0988238757 - - PREDICTED: nucleolin-like [Jatropha curcas]
13 Hb_000529_180 0.0989931507 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
14 Hb_001703_040 0.0992866775 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
15 Hb_005946_040 0.1006619395 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
16 Hb_000416_200 0.1026927922 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
17 Hb_005162_110 0.1033869754 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
18 Hb_002675_250 0.1054484041 - - aspartate aminotransferase, putative [Ricinus communis]
19 Hb_002631_240 0.1060674187 - - JHL17M24.3 [Jatropha curcas]
20 Hb_114310_070 0.1069872606 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]

Gene co-expression network

sample Hb_004109_260 Hb_004109_260 Hb_001824_080 Hb_001824_080 Hb_004109_260--Hb_001824_080 Hb_004339_040 Hb_004339_040 Hb_004109_260--Hb_004339_040 Hb_000802_130 Hb_000802_130 Hb_004109_260--Hb_000802_130 Hb_000613_120 Hb_000613_120 Hb_004109_260--Hb_000613_120 Hb_001438_010 Hb_001438_010 Hb_004109_260--Hb_001438_010 Hb_000880_070 Hb_000880_070 Hb_004109_260--Hb_000880_070 Hb_004109_120 Hb_004109_120 Hb_001824_080--Hb_004109_120 Hb_000254_100 Hb_000254_100 Hb_001824_080--Hb_000254_100 Hb_000304_070 Hb_000304_070 Hb_001824_080--Hb_000304_070 Hb_001824_080--Hb_004339_040 Hb_007821_020 Hb_007821_020 Hb_001824_080--Hb_007821_020 Hb_004339_040--Hb_000880_070 Hb_004339_040--Hb_004109_120 Hb_001623_500 Hb_001623_500 Hb_004339_040--Hb_001623_500 Hb_005946_040 Hb_005946_040 Hb_004339_040--Hb_005946_040 Hb_000802_130--Hb_000613_120 Hb_021650_010 Hb_021650_010 Hb_000802_130--Hb_021650_010 Hb_001430_020 Hb_001430_020 Hb_000802_130--Hb_001430_020 Hb_011861_050 Hb_011861_050 Hb_000802_130--Hb_011861_050 Hb_102948_010 Hb_102948_010 Hb_000802_130--Hb_102948_010 Hb_010174_090 Hb_010174_090 Hb_000613_120--Hb_010174_090 Hb_001789_160 Hb_001789_160 Hb_000613_120--Hb_001789_160 Hb_006787_090 Hb_006787_090 Hb_000613_120--Hb_006787_090 Hb_031042_060 Hb_031042_060 Hb_000613_120--Hb_031042_060 Hb_007741_110 Hb_007741_110 Hb_001438_010--Hb_007741_110 Hb_003053_110 Hb_003053_110 Hb_001438_010--Hb_003053_110 Hb_001195_770 Hb_001195_770 Hb_001438_010--Hb_001195_770 Hb_006907_060 Hb_006907_060 Hb_001438_010--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_001438_010--Hb_000941_100 Hb_000529_180 Hb_000529_180 Hb_001438_010--Hb_000529_180 Hb_000321_140 Hb_000321_140 Hb_000880_070--Hb_000321_140 Hb_004100_050 Hb_004100_050 Hb_000880_070--Hb_004100_050 Hb_002055_020 Hb_002055_020 Hb_000880_070--Hb_002055_020 Hb_000880_070--Hb_000254_100 Hb_000880_070--Hb_001824_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.8211 3.64923 11.9492 4.26005 3.9712 4.71857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13008 3.96169 5.21243 4.99283 10.9826

CAGE analysis