Hb_001981_040

Information

Type transcription factor
Description TF Family: PHD
Location Contig1981: 71463-81584
Sequence    

Annotation

kegg
ID rcu:RCOM_1577650
description origin recognition complex subunit, putative
nr
ID XP_012089990.1
description PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
swissprot
ID Q710E8
description Origin of replication complex subunit 1A OS=Arabidopsis thaliana GN=ORC1A PE=1 SV=1
trembl
ID A0A067JRC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25915 PE=4 SV=1
Gene Ontology
ID GO:0005634
description origin recognition complex subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19898: 71705-80808 , PASA_asmbl_19899: 82355-85310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001981_040 0.0 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
2 Hb_000205_140 0.081830903 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
3 Hb_079526_040 0.0895753283 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
4 Hb_000637_150 0.0943675311 - - Protein CASP, putative [Ricinus communis]
5 Hb_031091_020 0.0962860991 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
6 Hb_001518_080 0.0965298061 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
7 Hb_000207_300 0.0972239252 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
8 Hb_002027_080 0.0984948612 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
9 Hb_005725_130 0.1001002448 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
10 Hb_005650_010 0.1036742312 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003581_200 0.1039193234 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
12 Hb_000244_180 0.1043229072 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000212_120 0.1043964166 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
14 Hb_006573_150 0.1054596569 - - PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
15 Hb_001348_080 0.1071870257 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
16 Hb_012733_070 0.1074382207 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
17 Hb_009225_020 0.1076226198 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
18 Hb_000359_210 0.1081799852 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005601_020 0.1094536739 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
20 Hb_000787_060 0.1095656341 - - thioredoxin domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001981_040 Hb_001981_040 Hb_000205_140 Hb_000205_140 Hb_001981_040--Hb_000205_140 Hb_079526_040 Hb_079526_040 Hb_001981_040--Hb_079526_040 Hb_000637_150 Hb_000637_150 Hb_001981_040--Hb_000637_150 Hb_031091_020 Hb_031091_020 Hb_001981_040--Hb_031091_020 Hb_001518_080 Hb_001518_080 Hb_001981_040--Hb_001518_080 Hb_000207_300 Hb_000207_300 Hb_001981_040--Hb_000207_300 Hb_000205_140--Hb_079526_040 Hb_091296_010 Hb_091296_010 Hb_000205_140--Hb_091296_010 Hb_003025_100 Hb_003025_100 Hb_000205_140--Hb_003025_100 Hb_006153_070 Hb_006153_070 Hb_000205_140--Hb_006153_070 Hb_000205_140--Hb_001518_080 Hb_079526_040--Hb_001518_080 Hb_000078_140 Hb_000078_140 Hb_079526_040--Hb_000078_140 Hb_003581_200 Hb_003581_200 Hb_079526_040--Hb_003581_200 Hb_159809_070 Hb_159809_070 Hb_079526_040--Hb_159809_070 Hb_000046_500 Hb_000046_500 Hb_079526_040--Hb_000046_500 Hb_005650_010 Hb_005650_010 Hb_079526_040--Hb_005650_010 Hb_001584_140 Hb_001584_140 Hb_000637_150--Hb_001584_140 Hb_001789_030 Hb_001789_030 Hb_000637_150--Hb_001789_030 Hb_001205_250 Hb_001205_250 Hb_000637_150--Hb_001205_250 Hb_000637_150--Hb_001518_080 Hb_000008_290 Hb_000008_290 Hb_000637_150--Hb_000008_290 Hb_005488_020 Hb_005488_020 Hb_000637_150--Hb_005488_020 Hb_002027_080 Hb_002027_080 Hb_031091_020--Hb_002027_080 Hb_000181_100 Hb_000181_100 Hb_031091_020--Hb_000181_100 Hb_000320_470 Hb_000320_470 Hb_031091_020--Hb_000320_470 Hb_031091_020--Hb_001518_080 Hb_003186_020 Hb_003186_020 Hb_031091_020--Hb_003186_020 Hb_000635_090 Hb_000635_090 Hb_031091_020--Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_001518_080--Hb_002027_080 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_004109_120 Hb_004109_120 Hb_000207_300--Hb_004109_120 Hb_003728_100 Hb_003728_100 Hb_000207_300--Hb_003728_100 Hb_009225_020 Hb_009225_020 Hb_000207_300--Hb_009225_020 Hb_000304_070 Hb_000304_070 Hb_000207_300--Hb_000304_070 Hb_000212_440 Hb_000212_440 Hb_000207_300--Hb_000212_440 Hb_001824_080 Hb_001824_080 Hb_000207_300--Hb_001824_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41186 1.06444 3.63039 3.81558 2.16713 2.48225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90075 1.55115 2.09923 3.25139 4.77761

CAGE analysis