Hb_000172_380

Information

Type -
Description -
Location Contig172: 439834-441307
Sequence    

Annotation

kegg
ID rcu:RCOM_0944380
description small heat-shock protein, putative
nr
ID XP_002514458.1
description small heat-shock protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RL39
description Small heat-shock protein, putative OS=Ricinus communis GN=RCOM_0944380 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16157: 439907-441090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_380 0.0 - - small heat-shock protein, putative [Ricinus communis]
2 Hb_000059_270 0.1161380645 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
3 Hb_004735_020 0.1225036599 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
4 Hb_001080_070 0.1290405149 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
5 Hb_000114_150 0.12918057 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
6 Hb_001220_050 0.1304483319 - - DNA-damage-inducible protein f, putative [Ricinus communis]
7 Hb_009020_040 0.1309994662 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
8 Hb_000661_090 0.1338712281 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
9 Hb_000521_090 0.1345442811 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
10 Hb_000878_030 0.1356044475 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_000300_020 0.1390443043 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
12 Hb_000062_400 0.1393292077 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000189_450 0.1393998283 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
14 Hb_000107_590 0.141534347 - - PREDICTED: tricalbin-3 [Jatropha curcas]
15 Hb_000816_200 0.1434002991 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
16 Hb_009767_130 0.1442809222 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
17 Hb_016461_030 0.1457089235 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_006198_130 0.1457321995 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
19 Hb_002685_060 0.1494323152 - - 30S ribosomal protein S5, putative [Ricinus communis]
20 Hb_000331_490 0.1503988266 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000172_380 Hb_000172_380 Hb_000059_270 Hb_000059_270 Hb_000172_380--Hb_000059_270 Hb_004735_020 Hb_004735_020 Hb_000172_380--Hb_004735_020 Hb_001080_070 Hb_001080_070 Hb_000172_380--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000172_380--Hb_000114_150 Hb_001220_050 Hb_001220_050 Hb_000172_380--Hb_001220_050 Hb_009020_040 Hb_009020_040 Hb_000172_380--Hb_009020_040 Hb_006198_130 Hb_006198_130 Hb_000059_270--Hb_006198_130 Hb_000816_200 Hb_000816_200 Hb_000059_270--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_000059_270--Hb_016461_030 Hb_003171_030 Hb_003171_030 Hb_000059_270--Hb_003171_030 Hb_009687_020 Hb_009687_020 Hb_000059_270--Hb_009687_020 Hb_000345_370 Hb_000345_370 Hb_000059_270--Hb_000345_370 Hb_001009_260 Hb_001009_260 Hb_004735_020--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_004735_020--Hb_000120_860 Hb_003682_070 Hb_003682_070 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_010344_030 Hb_010344_030 Hb_004735_020--Hb_010344_030 Hb_130589_010 Hb_130589_010 Hb_004735_020--Hb_130589_010 Hb_000189_450 Hb_000189_450 Hb_001080_070--Hb_000189_450 Hb_003142_010 Hb_003142_010 Hb_001080_070--Hb_003142_010 Hb_001080_070--Hb_000345_370 Hb_000648_040 Hb_000648_040 Hb_001080_070--Hb_000648_040 Hb_001080_070--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_001080_070--Hb_001677_220 Hb_000114_150--Hb_000816_200 Hb_000107_590 Hb_000107_590 Hb_000114_150--Hb_000107_590 Hb_000397_150 Hb_000397_150 Hb_000114_150--Hb_000397_150 Hb_000114_150--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000114_150--Hb_007441_310 Hb_000983_070 Hb_000983_070 Hb_000114_150--Hb_000983_070 Hb_001220_050--Hb_000345_370 Hb_007769_040 Hb_007769_040 Hb_001220_050--Hb_007769_040 Hb_001220_050--Hb_009020_040 Hb_011861_050 Hb_011861_050 Hb_001220_050--Hb_011861_050 Hb_001723_030 Hb_001723_030 Hb_001220_050--Hb_001723_030 Hb_001220_050--Hb_006198_130 Hb_000200_350 Hb_000200_350 Hb_009020_040--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_009020_040--Hb_000388_150 Hb_005250_010 Hb_005250_010 Hb_009020_040--Hb_005250_010 Hb_002232_390 Hb_002232_390 Hb_009020_040--Hb_002232_390 Hb_003475_020 Hb_003475_020 Hb_009020_040--Hb_003475_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28459 0.601598 2.60843 3.77855 1.22444 1.39451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76051 1.46376 0.947003 1.00215 9.31123

CAGE analysis