Hb_000300_660

Information

Type -
Description -
Location Contig300: 598677-599929
Sequence    

Annotation

kegg
ID -
description -
nr
ID ACU22854.1
description unknown [Glycine max]
swissprot
ID -
description -
trembl
ID F6GWU6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31638: 598709-601276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_660 0.0 - - unknown [Glycine max]
2 Hb_000028_110 0.11617631 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
3 Hb_009767_130 0.1188132833 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
4 Hb_000371_100 0.1250706229 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
5 Hb_015934_120 0.127174303 - - PREDICTED: callose synthase 7 [Vitis vinifera]
6 Hb_000327_110 0.127237276 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
7 Hb_003994_110 0.1324492852 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
8 Hb_000337_050 0.1325474558 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
9 Hb_002496_020 0.1346460821 - - DNA binding protein, putative [Ricinus communis]
10 Hb_003544_010 0.1348583596 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_000164_140 0.1365067718 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_000172_580 0.1391814221 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000331_490 0.1424699436 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
14 Hb_010883_040 0.1429733306 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
15 Hb_000462_090 0.1451895289 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
16 Hb_003020_260 0.1463783685 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
17 Hb_000983_040 0.1465326686 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
18 Hb_001314_080 0.1470475663 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
19 Hb_000622_240 0.1472307877 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
20 Hb_000613_110 0.1473957557 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_660 Hb_000300_660 Hb_000028_110 Hb_000028_110 Hb_000300_660--Hb_000028_110 Hb_009767_130 Hb_009767_130 Hb_000300_660--Hb_009767_130 Hb_000371_100 Hb_000371_100 Hb_000300_660--Hb_000371_100 Hb_015934_120 Hb_015934_120 Hb_000300_660--Hb_015934_120 Hb_000327_110 Hb_000327_110 Hb_000300_660--Hb_000327_110 Hb_003994_110 Hb_003994_110 Hb_000300_660--Hb_003994_110 Hb_000107_570 Hb_000107_570 Hb_000028_110--Hb_000107_570 Hb_158845_050 Hb_158845_050 Hb_000028_110--Hb_158845_050 Hb_002304_080 Hb_002304_080 Hb_000028_110--Hb_002304_080 Hb_000164_140 Hb_000164_140 Hb_000028_110--Hb_000164_140 Hb_006538_120 Hb_006538_120 Hb_000028_110--Hb_006538_120 Hb_093458_060 Hb_093458_060 Hb_000028_110--Hb_093458_060 Hb_009767_130--Hb_000327_110 Hb_001449_070 Hb_001449_070 Hb_009767_130--Hb_001449_070 Hb_000189_450 Hb_000189_450 Hb_009767_130--Hb_000189_450 Hb_003994_160 Hb_003994_160 Hb_009767_130--Hb_003994_160 Hb_000941_100 Hb_000941_100 Hb_009767_130--Hb_000941_100 Hb_007054_070 Hb_007054_070 Hb_009767_130--Hb_007054_070 Hb_005672_020 Hb_005672_020 Hb_000371_100--Hb_005672_020 Hb_001504_030 Hb_001504_030 Hb_000371_100--Hb_001504_030 Hb_001828_040 Hb_001828_040 Hb_000371_100--Hb_001828_040 Hb_000371_100--Hb_000028_110 Hb_002496_020 Hb_002496_020 Hb_000371_100--Hb_002496_020 Hb_001314_080 Hb_001314_080 Hb_000371_100--Hb_001314_080 Hb_006683_070 Hb_006683_070 Hb_015934_120--Hb_006683_070 Hb_015934_120--Hb_001314_080 Hb_185255_010 Hb_185255_010 Hb_015934_120--Hb_185255_010 Hb_005144_050 Hb_005144_050 Hb_015934_120--Hb_005144_050 Hb_005800_030 Hb_005800_030 Hb_015934_120--Hb_005800_030 Hb_000172_440 Hb_000172_440 Hb_015934_120--Hb_000172_440 Hb_174865_040 Hb_174865_040 Hb_000327_110--Hb_174865_040 Hb_000327_110--Hb_000172_440 Hb_000368_090 Hb_000368_090 Hb_000327_110--Hb_000368_090 Hb_000327_110--Hb_001449_070 Hb_000327_110--Hb_015934_120 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_000613_110 Hb_000613_110 Hb_003994_110--Hb_000613_110 Hb_032920_050 Hb_032920_050 Hb_003994_110--Hb_032920_050 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.96936 4.05907 7.71999 16.8629 7.09552 11.8698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7204 15.9247 12.3144 5.33503 41.1937

CAGE analysis