Hb_000243_200

Information

Type -
Description -
Location Contig243: 179483-183339
Sequence    

Annotation

kegg
ID rcu:RCOM_0779170
description hypothetical protein
nr
ID XP_002533304.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T4Y5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0779170 PE=4 SV=1
Gene Ontology
ID GO:0003676
description eukaryotic translation initiation factor 5b-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25369: 179472-180244 , PASA_asmbl_25370: 181134-181322 , PASA_asmbl_25371: 182845-183332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_032202_230 0.0991121619 - - peroxisomal biogenesis factor, putative [Ricinus communis]
3 Hb_004951_070 0.1031371275 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
4 Hb_000576_050 0.1050834199 - - Kinase superfamily protein [Theobroma cacao]
5 Hb_007313_090 0.1168602043 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001427_050 0.1210411946 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
7 Hb_000390_310 0.1215619655 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
8 Hb_000948_180 0.1230278804 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
9 Hb_162286_010 0.1279494347 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
10 Hb_000175_590 0.1283656371 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
11 Hb_002022_060 0.1294984787 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
12 Hb_000368_020 0.1312545914 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
13 Hb_003467_010 0.1320534213 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
14 Hb_001418_040 0.1323749167 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
15 Hb_001652_080 0.1326150309 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
16 Hb_008103_080 0.1327143401 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
17 Hb_005433_010 0.1330107182 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
18 Hb_003878_110 0.1349668927 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
19 Hb_135377_010 0.1353400683 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
20 Hb_000836_170 0.135901218 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000243_200 Hb_000243_200 Hb_032202_230 Hb_032202_230 Hb_000243_200--Hb_032202_230 Hb_004951_070 Hb_004951_070 Hb_000243_200--Hb_004951_070 Hb_000576_050 Hb_000576_050 Hb_000243_200--Hb_000576_050 Hb_007313_090 Hb_007313_090 Hb_000243_200--Hb_007313_090 Hb_001427_050 Hb_001427_050 Hb_000243_200--Hb_001427_050 Hb_000390_310 Hb_000390_310 Hb_000243_200--Hb_000390_310 Hb_001652_080 Hb_001652_080 Hb_032202_230--Hb_001652_080 Hb_000368_020 Hb_000368_020 Hb_032202_230--Hb_000368_020 Hb_006452_160 Hb_006452_160 Hb_032202_230--Hb_006452_160 Hb_032202_230--Hb_000576_050 Hb_003994_200 Hb_003994_200 Hb_032202_230--Hb_003994_200 Hb_000042_340 Hb_000042_340 Hb_032202_230--Hb_000042_340 Hb_002093_030 Hb_002093_030 Hb_004951_070--Hb_002093_030 Hb_000175_590 Hb_000175_590 Hb_004951_070--Hb_000175_590 Hb_004951_070--Hb_032202_230 Hb_004951_070--Hb_000390_310 Hb_007044_040 Hb_007044_040 Hb_004951_070--Hb_007044_040 Hb_058972_010 Hb_058972_010 Hb_000576_050--Hb_058972_010 Hb_001418_040 Hb_001418_040 Hb_000576_050--Hb_001418_040 Hb_000649_070 Hb_000649_070 Hb_000576_050--Hb_000649_070 Hb_000576_050--Hb_007313_090 Hb_006960_050 Hb_006960_050 Hb_000576_050--Hb_006960_050 Hb_000260_100 Hb_000260_100 Hb_000576_050--Hb_000260_100 Hb_000926_180 Hb_000926_180 Hb_007313_090--Hb_000926_180 Hb_000836_170 Hb_000836_170 Hb_007313_090--Hb_000836_170 Hb_004785_190 Hb_004785_190 Hb_007313_090--Hb_004785_190 Hb_007313_090--Hb_058972_010 Hb_027043_020 Hb_027043_020 Hb_007313_090--Hb_027043_020 Hb_002292_010 Hb_002292_010 Hb_001427_050--Hb_002292_010 Hb_003687_230 Hb_003687_230 Hb_001427_050--Hb_003687_230 Hb_007007_050 Hb_007007_050 Hb_001427_050--Hb_007007_050 Hb_002639_150 Hb_002639_150 Hb_001427_050--Hb_002639_150 Hb_003467_010 Hb_003467_010 Hb_001427_050--Hb_003467_010 Hb_001427_050--Hb_000926_180 Hb_000948_180 Hb_000948_180 Hb_000390_310--Hb_000948_180 Hb_000390_310--Hb_032202_230 Hb_000390_310--Hb_000175_590 Hb_000390_310--Hb_001652_080 Hb_001213_130 Hb_001213_130 Hb_000390_310--Hb_001213_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.60405 2.72377 5.05384 1.64779 3.9456 4.44003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.69017 2.90306 0.637419 1.69251 3.3298

CAGE analysis