Hb_000228_090

Information

Type -
Description -
Location Contig228: 139756-142073
Sequence    

Annotation

kegg
ID rcu:RCOM_0865870
description hypothetical protein
nr
ID XP_012075064.1
description PREDICTED: protein PAM68, chloroplastic [Jatropha curcas]
swissprot
ID O49668
description Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1
trembl
ID A0A067KK85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10801 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23767: 139808-142081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000228_090 0.0 - - PREDICTED: protein PAM68, chloroplastic [Jatropha curcas]
2 Hb_001097_100 0.1331328204 - - Chaperone DnaJ-domain superfamily protein [Theobroma cacao]
3 Hb_158092_030 0.1355932387 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Jatropha curcas]
4 Hb_029695_110 0.1519506855 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
5 Hb_032202_180 0.1520360326 - - PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Jatropha curcas]
6 Hb_000031_090 0.1755317273 - - PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Jatropha curcas]
7 Hb_007313_090 0.1769254894 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005276_130 0.1809829966 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002184_150 0.1817621331 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_111722_010 0.1824835033 - - PREDICTED: uncharacterized protein LOC105634044 isoform X2 [Jatropha curcas]
11 Hb_000959_030 0.1827353158 - - mitochondrial carrier protein, putative [Ricinus communis]
12 Hb_000920_030 0.1882516635 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_006132_070 0.188660453 - - phosphate transporter [Manihot esculenta]
14 Hb_003861_070 0.1889812146 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
15 Hb_000441_060 0.1907478063 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
16 Hb_006694_020 0.1908901699 - - PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
17 Hb_002769_020 0.1910000792 - - DNA-damage-inducible protein f, putative [Ricinus communis]
18 Hb_001085_050 0.1918107552 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
19 Hb_000723_100 0.1931419228 - - phosphoglycerate kinase, putative [Ricinus communis]
20 Hb_114336_030 0.1942428193 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]

Gene co-expression network

sample Hb_000228_090 Hb_000228_090 Hb_001097_100 Hb_001097_100 Hb_000228_090--Hb_001097_100 Hb_158092_030 Hb_158092_030 Hb_000228_090--Hb_158092_030 Hb_029695_110 Hb_029695_110 Hb_000228_090--Hb_029695_110 Hb_032202_180 Hb_032202_180 Hb_000228_090--Hb_032202_180 Hb_000031_090 Hb_000031_090 Hb_000228_090--Hb_000031_090 Hb_007313_090 Hb_007313_090 Hb_000228_090--Hb_007313_090 Hb_114336_030 Hb_114336_030 Hb_001097_100--Hb_114336_030 Hb_001699_210 Hb_001699_210 Hb_001097_100--Hb_001699_210 Hb_001114_160 Hb_001114_160 Hb_001097_100--Hb_001114_160 Hb_001097_100--Hb_032202_180 Hb_012340_090 Hb_012340_090 Hb_001097_100--Hb_012340_090 Hb_005276_130 Hb_005276_130 Hb_158092_030--Hb_005276_130 Hb_158092_030--Hb_000031_090 Hb_158092_030--Hb_029695_110 Hb_003752_070 Hb_003752_070 Hb_158092_030--Hb_003752_070 Hb_000051_060 Hb_000051_060 Hb_158092_030--Hb_000051_060 Hb_000920_030 Hb_000920_030 Hb_029695_110--Hb_000920_030 Hb_001205_300 Hb_001205_300 Hb_029695_110--Hb_001205_300 Hb_000959_030 Hb_000959_030 Hb_029695_110--Hb_000959_030 Hb_003462_070 Hb_003462_070 Hb_029695_110--Hb_003462_070 Hb_002304_080 Hb_002304_080 Hb_029695_110--Hb_002304_080 Hb_000723_100 Hb_000723_100 Hb_029695_110--Hb_000723_100 Hb_032202_180--Hb_029695_110 Hb_001022_030 Hb_001022_030 Hb_032202_180--Hb_001022_030 Hb_032202_180--Hb_001205_300 Hb_032202_180--Hb_000959_030 Hb_032202_180--Hb_003752_070 Hb_003728_100 Hb_003728_100 Hb_032202_180--Hb_003728_100 Hb_000031_090--Hb_000723_100 Hb_005433_010 Hb_005433_010 Hb_000031_090--Hb_005433_010 Hb_000031_090--Hb_029695_110 Hb_000031_090--Hb_001097_100 Hb_000031_090--Hb_005276_130 Hb_000926_180 Hb_000926_180 Hb_007313_090--Hb_000926_180 Hb_000576_050 Hb_000576_050 Hb_007313_090--Hb_000576_050 Hb_000836_170 Hb_000836_170 Hb_007313_090--Hb_000836_170 Hb_004785_190 Hb_004785_190 Hb_007313_090--Hb_004785_190 Hb_058972_010 Hb_058972_010 Hb_007313_090--Hb_058972_010 Hb_027043_020 Hb_027043_020 Hb_007313_090--Hb_027043_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.8764 6.74423 49.5053 16.0549 27.7743 35.5217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.4673 26.1063 1.65463 4.89431 35.1792

CAGE analysis