Hb_008725_140

Information

Type -
Description -
Location Contig8725: 92865-96378
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11910g
description POPTRDRAFT_245660; hypothetical protein
nr
ID XP_012067256.1
description PREDICTED: kynurenine--oxoglutarate transaminase-like isoform X1 [Jatropha curcas]
swissprot
ID P77806
description Methionine aminotransferase OS=Escherichia coli (strain K12) GN=ybdL PE=1 SV=1
trembl
ID A0A067L3K2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26796 PE=3 SV=1
Gene Ontology
ID GO:0004069
description kynurenine--oxoglutarate transaminase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61190: 93664-95564 , PASA_asmbl_61191: 93190-93757 , PASA_asmbl_61192: 95887-96277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_140 0.0 - - PREDICTED: kynurenine--oxoglutarate transaminase-like isoform X1 [Jatropha curcas]
2 Hb_002249_040 0.0991470451 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
3 Hb_002265_010 0.1349345543 - - ef-hand calcium binding protein, putative [Ricinus communis]
4 Hb_000424_070 0.1514191698 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
5 Hb_000538_260 0.1590339674 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
6 Hb_011609_010 0.1592964121 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
7 Hb_006618_070 0.16215269 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
8 Hb_000803_090 0.1650966566 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
9 Hb_001624_040 0.1681789097 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
10 Hb_065525_130 0.1700528211 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_155025_010 0.1717462463 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
12 Hb_001105_050 0.1724181785 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
13 Hb_073973_030 0.1734008163 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
14 Hb_000418_090 0.1745511059 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_002151_010 0.1757528329 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
16 Hb_054865_020 0.1764467454 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
17 Hb_004116_160 0.1771669693 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
18 Hb_000123_140 0.1782592704 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
19 Hb_000211_040 0.179002179 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
20 Hb_000300_710 0.1793943568 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]

Gene co-expression network

sample Hb_008725_140 Hb_008725_140 Hb_002249_040 Hb_002249_040 Hb_008725_140--Hb_002249_040 Hb_002265_010 Hb_002265_010 Hb_008725_140--Hb_002265_010 Hb_000424_070 Hb_000424_070 Hb_008725_140--Hb_000424_070 Hb_000538_260 Hb_000538_260 Hb_008725_140--Hb_000538_260 Hb_011609_010 Hb_011609_010 Hb_008725_140--Hb_011609_010 Hb_006618_070 Hb_006618_070 Hb_008725_140--Hb_006618_070 Hb_002249_040--Hb_006618_070 Hb_001624_040 Hb_001624_040 Hb_002249_040--Hb_001624_040 Hb_004116_160 Hb_004116_160 Hb_002249_040--Hb_004116_160 Hb_002301_210 Hb_002301_210 Hb_002249_040--Hb_002301_210 Hb_000749_200 Hb_000749_200 Hb_002249_040--Hb_000749_200 Hb_155025_010 Hb_155025_010 Hb_002265_010--Hb_155025_010 Hb_006502_020 Hb_006502_020 Hb_002265_010--Hb_006502_020 Hb_005873_020 Hb_005873_020 Hb_002265_010--Hb_005873_020 Hb_005731_110 Hb_005731_110 Hb_002265_010--Hb_005731_110 Hb_000663_020 Hb_000663_020 Hb_002265_010--Hb_000663_020 Hb_065525_130 Hb_065525_130 Hb_002265_010--Hb_065525_130 Hb_000300_710 Hb_000300_710 Hb_000424_070--Hb_000300_710 Hb_029622_030 Hb_029622_030 Hb_000424_070--Hb_029622_030 Hb_000010_130 Hb_000010_130 Hb_000424_070--Hb_000010_130 Hb_000211_040 Hb_000211_040 Hb_000424_070--Hb_000211_040 Hb_002960_110 Hb_002960_110 Hb_000424_070--Hb_002960_110 Hb_005194_040 Hb_005194_040 Hb_000424_070--Hb_005194_040 Hb_000538_260--Hb_065525_130 Hb_003638_010 Hb_003638_010 Hb_000538_260--Hb_003638_010 Hb_003849_040 Hb_003849_040 Hb_000538_260--Hb_003849_040 Hb_000156_160 Hb_000156_160 Hb_000538_260--Hb_000156_160 Hb_018202_050 Hb_018202_050 Hb_000538_260--Hb_018202_050 Hb_000985_040 Hb_000985_040 Hb_000538_260--Hb_000985_040 Hb_000803_090 Hb_000803_090 Hb_011609_010--Hb_000803_090 Hb_011609_010--Hb_001624_040 Hb_000008_390 Hb_000008_390 Hb_011609_010--Hb_000008_390 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360 Hb_003529_180 Hb_003529_180 Hb_011609_010--Hb_003529_180 Hb_002498_170 Hb_002498_170 Hb_006618_070--Hb_002498_170 Hb_000140_440 Hb_000140_440 Hb_006618_070--Hb_000140_440 Hb_006618_070--Hb_000211_040 Hb_001959_240 Hb_001959_240 Hb_006618_070--Hb_001959_240 Hb_006555_040 Hb_006555_040 Hb_006618_070--Hb_006555_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47658 2.44512 6.04189 1.3664 1.67495 2.42876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.566292 0.445455 0.0591981 0.267654 2.2392

CAGE analysis