Hb_000010_130

Information

Type -
Description -
Location Contig10: 195149-197029
Sequence    

Annotation

kegg
ID pxb:103959418
description rhodanese-like domain-containing protein 11, chloroplastic
nr
ID XP_009370040.1
description PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID K7KL20
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0034660
description rhodanese-like domain-containing protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00146: 194946-212067 , PASA_asmbl_00147: 195076-209462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_130 0.0 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
2 Hb_015292_040 0.1237193578 - - PREDICTED: myb-like protein X [Jatropha curcas]
3 Hb_000424_070 0.1303663599 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
4 Hb_000313_290 0.1348523114 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_030131_020 0.1392270068 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
6 Hb_000418_090 0.1407825297 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_006618_070 0.1435134563 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
8 Hb_000211_040 0.1451059112 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
9 Hb_001930_030 0.1457688391 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
10 Hb_001959_240 0.1497181565 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_007229_030 0.1504904622 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Jatropha curcas]
12 Hb_001624_040 0.156339509 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
13 Hb_000364_100 0.1571850906 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
14 Hb_000345_290 0.1578106274 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000532_100 0.1608572115 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
16 Hb_006555_040 0.1616040944 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
17 Hb_004994_080 0.1645822379 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000264_180 0.164670718 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
19 Hb_000302_190 0.1686450747 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
20 Hb_031042_060 0.1687304265 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000010_130 Hb_000010_130 Hb_015292_040 Hb_015292_040 Hb_000010_130--Hb_015292_040 Hb_000424_070 Hb_000424_070 Hb_000010_130--Hb_000424_070 Hb_000313_290 Hb_000313_290 Hb_000010_130--Hb_000313_290 Hb_030131_020 Hb_030131_020 Hb_000010_130--Hb_030131_020 Hb_000418_090 Hb_000418_090 Hb_000010_130--Hb_000418_090 Hb_006618_070 Hb_006618_070 Hb_000010_130--Hb_006618_070 Hb_004994_080 Hb_004994_080 Hb_015292_040--Hb_004994_080 Hb_000211_040 Hb_000211_040 Hb_015292_040--Hb_000211_040 Hb_001930_030 Hb_001930_030 Hb_015292_040--Hb_001930_030 Hb_000663_020 Hb_000663_020 Hb_015292_040--Hb_000663_020 Hb_001839_020 Hb_001839_020 Hb_015292_040--Hb_001839_020 Hb_000364_100 Hb_000364_100 Hb_015292_040--Hb_000364_100 Hb_000300_710 Hb_000300_710 Hb_000424_070--Hb_000300_710 Hb_029622_030 Hb_029622_030 Hb_000424_070--Hb_029622_030 Hb_000424_070--Hb_000211_040 Hb_002960_110 Hb_002960_110 Hb_000424_070--Hb_002960_110 Hb_005194_040 Hb_005194_040 Hb_000424_070--Hb_005194_040 Hb_000313_290--Hb_000418_090 Hb_001624_040 Hb_001624_040 Hb_000313_290--Hb_001624_040 Hb_000331_340 Hb_000331_340 Hb_000313_290--Hb_000331_340 Hb_003683_030 Hb_003683_030 Hb_000313_290--Hb_003683_030 Hb_001250_040 Hb_001250_040 Hb_000313_290--Hb_001250_040 Hb_004052_070 Hb_004052_070 Hb_030131_020--Hb_004052_070 Hb_000808_210 Hb_000808_210 Hb_030131_020--Hb_000808_210 Hb_000009_020 Hb_000009_020 Hb_030131_020--Hb_000009_020 Hb_030131_020--Hb_001624_040 Hb_029695_070 Hb_029695_070 Hb_030131_020--Hb_029695_070 Hb_001450_020 Hb_001450_020 Hb_030131_020--Hb_001450_020 Hb_000418_090--Hb_001624_040 Hb_000418_090--Hb_000331_340 Hb_000453_230 Hb_000453_230 Hb_000418_090--Hb_000453_230 Hb_000418_090--Hb_001250_040 Hb_002498_170 Hb_002498_170 Hb_006618_070--Hb_002498_170 Hb_000140_440 Hb_000140_440 Hb_006618_070--Hb_000140_440 Hb_002249_040 Hb_002249_040 Hb_006618_070--Hb_002249_040 Hb_006618_070--Hb_000211_040 Hb_001959_240 Hb_001959_240 Hb_006618_070--Hb_001959_240 Hb_006555_040 Hb_006555_040 Hb_006618_070--Hb_006555_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.28925 6.57827 34.5614 4.32033 14.3121 7.53057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.14657 3.25905 1.86415 6.36033 15.0339

CAGE analysis