Hb_002960_110

Information

Type -
Description -
Location Contig2960: 101628-106726
Sequence    

Annotation

kegg
ID vvi:100260940
description synaptotagmin-2
nr
ID XP_012073767.1
description PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
swissprot
ID B6ETT4
description Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1
trembl
ID A0A067KL94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08193 PE=4 SV=1
Gene Ontology
ID GO:0005623
description synaptotagmin-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30963: 100684-106685 , PASA_asmbl_30964: 101713-106649 , PASA_asmbl_30965: 101713-104928 , PASA_asmbl_30966: 100684-104200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_110 0.0 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
2 Hb_000424_070 0.1368401134 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
3 Hb_074792_010 0.1530317641 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
4 Hb_000189_390 0.156469273 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
5 Hb_003529_180 0.1651072857 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_000300_710 0.1720788258 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
7 Hb_000638_260 0.1735426005 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
8 Hb_011609_010 0.1767417094 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
9 Hb_004052_070 0.1846739241 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
10 Hb_076233_030 0.1879666634 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
11 Hb_007229_030 0.1880675715 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Jatropha curcas]
12 Hb_012586_050 0.1892738621 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
13 Hb_005194_040 0.1926530415 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_027472_130 0.1969638417 - - Cytochrome P450 [Theobroma cacao]
15 Hb_003430_040 0.1975112968 - - spermidine synthase 1, putative [Ricinus communis]
16 Hb_000211_040 0.1983917185 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
17 Hb_002475_120 0.2008793403 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
18 Hb_001624_040 0.2028703363 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
19 Hb_000390_020 0.2041656414 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
20 Hb_000803_090 0.2042623681 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002960_110 Hb_002960_110 Hb_000424_070 Hb_000424_070 Hb_002960_110--Hb_000424_070 Hb_074792_010 Hb_074792_010 Hb_002960_110--Hb_074792_010 Hb_000189_390 Hb_000189_390 Hb_002960_110--Hb_000189_390 Hb_003529_180 Hb_003529_180 Hb_002960_110--Hb_003529_180 Hb_000300_710 Hb_000300_710 Hb_002960_110--Hb_000300_710 Hb_000638_260 Hb_000638_260 Hb_002960_110--Hb_000638_260 Hb_000424_070--Hb_000300_710 Hb_029622_030 Hb_029622_030 Hb_000424_070--Hb_029622_030 Hb_000010_130 Hb_000010_130 Hb_000424_070--Hb_000010_130 Hb_000211_040 Hb_000211_040 Hb_000424_070--Hb_000211_040 Hb_005194_040 Hb_005194_040 Hb_000424_070--Hb_005194_040 Hb_003430_040 Hb_003430_040 Hb_074792_010--Hb_003430_040 Hb_074792_010--Hb_000300_710 Hb_000347_140 Hb_000347_140 Hb_074792_010--Hb_000347_140 Hb_000732_030 Hb_000732_030 Hb_074792_010--Hb_000732_030 Hb_074792_010--Hb_000638_260 Hb_003874_010 Hb_003874_010 Hb_074792_010--Hb_003874_010 Hb_076233_030 Hb_076233_030 Hb_000189_390--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_000189_390--Hb_014497_030 Hb_000803_090 Hb_000803_090 Hb_000189_390--Hb_000803_090 Hb_011609_010 Hb_011609_010 Hb_000189_390--Hb_011609_010 Hb_000189_390--Hb_003529_180 Hb_124951_010 Hb_124951_010 Hb_000189_390--Hb_124951_010 Hb_002600_130 Hb_002600_130 Hb_003529_180--Hb_002600_130 Hb_003529_180--Hb_000732_030 Hb_003529_180--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_003529_180--Hb_004725_030 Hb_000009_220 Hb_000009_220 Hb_003529_180--Hb_000009_220 Hb_000300_710--Hb_000347_140 Hb_000300_710--Hb_003874_010 Hb_000300_710--Hb_003430_040 Hb_188739_010 Hb_188739_010 Hb_000300_710--Hb_188739_010 Hb_000638_260--Hb_000347_140 Hb_028487_120 Hb_028487_120 Hb_000638_260--Hb_028487_120 Hb_000345_410 Hb_000345_410 Hb_000638_260--Hb_000345_410 Hb_008406_100 Hb_008406_100 Hb_000638_260--Hb_008406_100 Hb_000638_260--Hb_003430_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.547 29.1804 162.627 23.8249 48.8287 22.764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.99233 2.72838 9.49221 5.07753 25.1285

CAGE analysis