Hb_074792_010

Information

Type -
Description -
Location Contig74792: 172-1313
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09170g
description POPTRDRAFT_737640; hypothetical protein
nr
ID XP_012477204.1
description PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
swissprot
ID Q8W593
description Probable lactoylglutathione lyase, chloroplast OS=Arabidopsis thaliana GN=At1g67280 PE=1 SV=1
trembl
ID A0A0D2S7A2
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G281400 PE=4 SV=1
Gene Ontology
ID GO:0009570
description glyoxalase bleomycin resistance protein dioxygenase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074792_010 0.0 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
2 Hb_003430_040 0.0807640732 - - spermidine synthase 1, putative [Ricinus communis]
3 Hb_000300_710 0.0992812219 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
4 Hb_000347_140 0.1099009176 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000732_030 0.1111779299 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000638_260 0.1352242499 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
7 Hb_003874_010 0.1408852413 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
8 Hb_003529_180 0.1434184926 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
9 Hb_013016_010 0.1447149163 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000424_070 0.1519931313 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
11 Hb_002960_110 0.1530317641 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
12 Hb_004957_020 0.1549496747 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000959_190 0.1594490115 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
14 Hb_188739_010 0.1608612636 - - protein binding protein, putative [Ricinus communis]
15 Hb_001214_190 0.161005645 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
16 Hb_124951_010 0.1618327074 - - chitinase-like protein [Hevea brasiliensis]
17 Hb_000032_200 0.1619374637 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
18 Hb_004449_140 0.1646882199 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
19 Hb_000816_210 0.1658579504 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
20 Hb_000120_350 0.167363573 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_074792_010 Hb_074792_010 Hb_003430_040 Hb_003430_040 Hb_074792_010--Hb_003430_040 Hb_000300_710 Hb_000300_710 Hb_074792_010--Hb_000300_710 Hb_000347_140 Hb_000347_140 Hb_074792_010--Hb_000347_140 Hb_000732_030 Hb_000732_030 Hb_074792_010--Hb_000732_030 Hb_000638_260 Hb_000638_260 Hb_074792_010--Hb_000638_260 Hb_003874_010 Hb_003874_010 Hb_074792_010--Hb_003874_010 Hb_003430_040--Hb_000347_140 Hb_003430_040--Hb_003874_010 Hb_003430_040--Hb_000732_030 Hb_000032_200 Hb_000032_200 Hb_003430_040--Hb_000032_200 Hb_003430_040--Hb_000300_710 Hb_000300_710--Hb_000347_140 Hb_000300_710--Hb_003874_010 Hb_188739_010 Hb_188739_010 Hb_000300_710--Hb_188739_010 Hb_000424_070 Hb_000424_070 Hb_000300_710--Hb_000424_070 Hb_000347_140--Hb_188739_010 Hb_000347_140--Hb_000032_200 Hb_000347_140--Hb_000638_260 Hb_000959_190 Hb_000959_190 Hb_000732_030--Hb_000959_190 Hb_003529_180 Hb_003529_180 Hb_000732_030--Hb_003529_180 Hb_001135_110 Hb_001135_110 Hb_000732_030--Hb_001135_110 Hb_000732_030--Hb_000032_200 Hb_028487_120 Hb_028487_120 Hb_000638_260--Hb_028487_120 Hb_000345_410 Hb_000345_410 Hb_000638_260--Hb_000345_410 Hb_008406_100 Hb_008406_100 Hb_000638_260--Hb_008406_100 Hb_000638_260--Hb_003430_040 Hb_000392_450 Hb_000392_450 Hb_003874_010--Hb_000392_450 Hb_002027_320 Hb_002027_320 Hb_003874_010--Hb_002027_320 Hb_007263_010 Hb_007263_010 Hb_003874_010--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_003874_010--Hb_004517_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.576 232.415 1407.1 201.427 148.147 171.264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.0033 82.6828 58.8939 50.1675 154.319

CAGE analysis