Hb_001135_110

Information

Type -
Description -
Location Contig1135: 139888-142320
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_110 0.0 - - -
2 Hb_000732_030 0.1224465752 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002498_240 0.1243802271 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
4 Hb_000959_190 0.1338928547 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
5 Hb_001123_110 0.1406293417 - - conserved hypothetical protein [Ricinus communis]
6 Hb_013834_010 0.1500804647 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
7 Hb_003747_050 0.1532143569 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
8 Hb_000803_090 0.1583340126 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
9 Hb_004032_160 0.1618151076 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
10 Hb_000300_710 0.1644798275 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
11 Hb_001195_640 0.1655838298 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
12 Hb_012787_030 0.1672055425 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
13 Hb_000390_020 0.1672593881 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
14 Hb_001519_040 0.1679865878 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
15 Hb_000123_140 0.1688584706 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
16 Hb_003529_180 0.1718886421 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
17 Hb_000008_390 0.1743479134 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
18 Hb_000120_350 0.1747379535 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
19 Hb_000211_040 0.1747580052 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
20 Hb_000032_200 0.1750016788 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_001135_110 Hb_001135_110 Hb_000732_030 Hb_000732_030 Hb_001135_110--Hb_000732_030 Hb_002498_240 Hb_002498_240 Hb_001135_110--Hb_002498_240 Hb_000959_190 Hb_000959_190 Hb_001135_110--Hb_000959_190 Hb_001123_110 Hb_001123_110 Hb_001135_110--Hb_001123_110 Hb_013834_010 Hb_013834_010 Hb_001135_110--Hb_013834_010 Hb_003747_050 Hb_003747_050 Hb_001135_110--Hb_003747_050 Hb_000732_030--Hb_000959_190 Hb_003430_040 Hb_003430_040 Hb_000732_030--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_000732_030--Hb_074792_010 Hb_003529_180 Hb_003529_180 Hb_000732_030--Hb_003529_180 Hb_000032_200 Hb_000032_200 Hb_000732_030--Hb_000032_200 Hb_005357_110 Hb_005357_110 Hb_002498_240--Hb_005357_110 Hb_001160_110 Hb_001160_110 Hb_002498_240--Hb_001160_110 Hb_004730_020 Hb_004730_020 Hb_002498_240--Hb_004730_020 Hb_074399_010 Hb_074399_010 Hb_002498_240--Hb_074399_010 Hb_002498_240--Hb_001123_110 Hb_003740_020 Hb_003740_020 Hb_002498_240--Hb_003740_020 Hb_000959_190--Hb_001123_110 Hb_000120_350 Hb_000120_350 Hb_000959_190--Hb_000120_350 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000640_050 Hb_000640_050 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_119583_020 Hb_119583_020 Hb_001123_110--Hb_119583_020 Hb_005511_130 Hb_005511_130 Hb_001123_110--Hb_005511_130 Hb_000984_220 Hb_000984_220 Hb_001123_110--Hb_000984_220 Hb_001123_110--Hb_001160_110 Hb_002400_050 Hb_002400_050 Hb_013834_010--Hb_002400_050 Hb_013834_010--Hb_000959_190 Hb_004920_050 Hb_004920_050 Hb_013834_010--Hb_004920_050 Hb_013344_010 Hb_013344_010 Hb_013834_010--Hb_013344_010 Hb_013834_010--Hb_000732_030 Hb_000803_090 Hb_000803_090 Hb_003747_050--Hb_000803_090 Hb_011671_110 Hb_011671_110 Hb_003747_050--Hb_011671_110 Hb_047442_010 Hb_047442_010 Hb_003747_050--Hb_047442_010 Hb_012787_030 Hb_012787_030 Hb_003747_050--Hb_012787_030 Hb_002600_130 Hb_002600_130 Hb_003747_050--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_003747_050--Hb_000317_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89676 1.3616 6.03379 2.89028 0.681622 0.935973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.715071 0.357815 0.0926999 0.537423 1.13184

CAGE analysis