Hb_188739_010

Information

Type -
Description -
Location Contig188739: 126-1008
Sequence    

Annotation

kegg
ID rcu:RCOM_0342940
description protein binding protein, putative
nr
ID XP_002523407.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9SRY4
description Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1
trembl
ID B9SBN8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0342940 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188739_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_002435_090 0.0967088365 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_000207_140 0.1033286963 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
4 Hb_001975_050 0.1062456327 - - Tyrosine-specific transport protein, putative [Ricinus communis]
5 Hb_000347_140 0.1236793948 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000300_710 0.1238923376 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
7 Hb_001343_120 0.1405409036 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003992_050 0.1480503964 - - delta 9 desaturase, putative [Ricinus communis]
9 Hb_002794_040 0.1521231753 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
10 Hb_000816_210 0.1557926908 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
11 Hb_140360_010 0.1565540695 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
12 Hb_074792_010 0.1608612636 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
13 Hb_000637_070 0.1616728951 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
14 Hb_000042_390 0.1634426364 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
15 Hb_003430_040 0.1745203112 - - spermidine synthase 1, putative [Ricinus communis]
16 Hb_000076_090 0.1749179326 - - protein with unknown function [Ricinus communis]
17 Hb_000032_200 0.1750451496 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
18 Hb_027654_070 0.1753516172 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004846_230 0.1792518468 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
20 Hb_006935_040 0.183735278 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]

Gene co-expression network

sample Hb_188739_010 Hb_188739_010 Hb_002435_090 Hb_002435_090 Hb_188739_010--Hb_002435_090 Hb_000207_140 Hb_000207_140 Hb_188739_010--Hb_000207_140 Hb_001975_050 Hb_001975_050 Hb_188739_010--Hb_001975_050 Hb_000347_140 Hb_000347_140 Hb_188739_010--Hb_000347_140 Hb_000300_710 Hb_000300_710 Hb_188739_010--Hb_000300_710 Hb_001343_120 Hb_001343_120 Hb_188739_010--Hb_001343_120 Hb_002435_090--Hb_000207_140 Hb_002435_090--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_002435_090--Hb_003992_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_000207_140--Hb_001343_120 Hb_000207_140--Hb_003992_050 Hb_000816_210 Hb_000816_210 Hb_000207_140--Hb_000816_210 Hb_000207_140--Hb_001975_050 Hb_000637_070 Hb_000637_070 Hb_001975_050--Hb_000637_070 Hb_001975_050--Hb_001343_120 Hb_001975_050--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070 Hb_003430_040 Hb_003430_040 Hb_000347_140--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_000347_140--Hb_074792_010 Hb_000347_140--Hb_000300_710 Hb_000032_200 Hb_000032_200 Hb_000347_140--Hb_000032_200 Hb_000638_260 Hb_000638_260 Hb_000347_140--Hb_000638_260 Hb_000300_710--Hb_074792_010 Hb_003874_010 Hb_003874_010 Hb_000300_710--Hb_003874_010 Hb_000300_710--Hb_003430_040 Hb_000424_070 Hb_000424_070 Hb_000300_710--Hb_000424_070 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_002540_060 Hb_002540_060 Hb_001343_120--Hb_002540_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.82604 6.99839 51.3102 5.42061 3.22398 3.21821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24941 3.43732 0.496503 1.46039 13.1983

CAGE analysis