Hb_000207_140

Information

Type -
Description -
Location Contig207: 177135-182628
Sequence    

Annotation

kegg
ID rcu:RCOM_0685950
description 50S ribosomal protein L21, putative
nr
ID XP_006371468.1
description hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
swissprot
ID P51412
description 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1
trembl
ID A9PEU7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11310g PE=2 SV=1
Gene Ontology
ID GO:0005634
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21311: 175107-176377 , PASA_asmbl_21312: 177102-182595
cDNA
(Sanger)
(ID:Location)		 050_H21.ab1: 177132-180233

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_140 0.0 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
2 Hb_002435_090 0.0569093275 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_188739_010 0.1033286963 - - protein binding protein, putative [Ricinus communis]
4 Hb_001343_120 0.1179972525 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003992_050 0.1209966663 - - delta 9 desaturase, putative [Ricinus communis]
6 Hb_000816_210 0.1243226774 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
7 Hb_001975_050 0.1310716748 - - Tyrosine-specific transport protein, putative [Ricinus communis]
8 Hb_002540_060 0.1380959048 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
9 Hb_000347_140 0.1389313847 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000028_150 0.1431937703 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
11 Hb_140360_010 0.149472637 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
12 Hb_027654_070 0.1536093043 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000500_330 0.1553537838 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
14 Hb_002603_090 0.1576815845 - - PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]
15 Hb_002817_010 0.1606428003 - - PREDICTED: uncharacterized protein LOC105630103 isoform X2 [Jatropha curcas]
16 Hb_004846_230 0.1632373883 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
17 Hb_000169_070 0.1643151862 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
18 Hb_004517_030 0.1703755565 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001386_090 0.1709094273 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
20 Hb_000637_070 0.1743434539 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]

Gene co-expression network

sample Hb_000207_140 Hb_000207_140 Hb_002435_090 Hb_002435_090 Hb_000207_140--Hb_002435_090 Hb_188739_010 Hb_188739_010 Hb_000207_140--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_000207_140--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_000207_140--Hb_003992_050 Hb_000816_210 Hb_000816_210 Hb_000207_140--Hb_000816_210 Hb_001975_050 Hb_001975_050 Hb_000207_140--Hb_001975_050 Hb_002435_090--Hb_188739_010 Hb_002435_090--Hb_001343_120 Hb_002435_090--Hb_003992_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_188739_010--Hb_001975_050 Hb_000347_140 Hb_000347_140 Hb_188739_010--Hb_000347_140 Hb_000300_710 Hb_000300_710 Hb_188739_010--Hb_000300_710 Hb_188739_010--Hb_001343_120 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_001975_050 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_002540_060 Hb_002540_060 Hb_001343_120--Hb_002540_060 Hb_003992_050--Hb_001975_050 Hb_003992_050--Hb_140360_010 Hb_003992_050--Hb_188739_010 Hb_001386_090 Hb_001386_090 Hb_003992_050--Hb_001386_090 Hb_000816_210--Hb_002435_090 Hb_000816_210--Hb_001975_050 Hb_000438_130 Hb_000438_130 Hb_000816_210--Hb_000438_130 Hb_000816_210--Hb_188739_010 Hb_003430_040 Hb_003430_040 Hb_000816_210--Hb_003430_040 Hb_000637_070 Hb_000637_070 Hb_001975_050--Hb_000637_070 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0477 10.7149 178.702 16.5248 10.2151 8.99662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25403 9.15572 3.65065 6.01358 46.1191

CAGE analysis