Hb_000042_390

Information

Type -
Description -
Location Contig42: 358906-360551
Sequence    

Annotation

kegg
ID rcu:RCOM_1407240
description hypothetical protein
nr
ID XP_012079214.1
description PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
swissprot
ID Q0WNX9
description Cyclin-dependent kinase inhibitor 6 OS=Arabidopsis thaliana GN=KRP6 PE=1 SV=2
trembl
ID A0A067KI15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12376 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cyclin-dependent kinase inhibitor 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41495: 358804-360408 , PASA_asmbl_41496: 359694-360026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_390 0.0 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
2 Hb_001343_120 0.1027224209 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001536_020 0.1280751427 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
4 Hb_001347_030 0.1286490863 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_012653_010 0.1363071069 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
6 Hb_107078_010 0.148306746 - - -
7 Hb_000494_010 0.1501946037 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
8 Hb_001975_050 0.1502263672 - - Tyrosine-specific transport protein, putative [Ricinus communis]
9 Hb_004218_050 0.151162476 - - annexin [Manihot esculenta]
10 Hb_000028_150 0.1572662632 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
11 Hb_010288_030 0.1586615748 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
12 Hb_004846_230 0.1631606858 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
13 Hb_188739_010 0.1634426364 - - protein binding protein, putative [Ricinus communis]
14 Hb_000032_200 0.1644147965 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_007574_020 0.1659250009 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
16 Hb_003095_100 0.1665465176 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002435_090 0.1667583467 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
18 Hb_000110_240 0.1679135514 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
19 Hb_003935_090 0.1690912001 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
20 Hb_010683_070 0.1691831933 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000042_390 Hb_000042_390 Hb_001343_120 Hb_001343_120 Hb_000042_390--Hb_001343_120 Hb_001536_020 Hb_001536_020 Hb_000042_390--Hb_001536_020 Hb_001347_030 Hb_001347_030 Hb_000042_390--Hb_001347_030 Hb_012653_010 Hb_012653_010 Hb_000042_390--Hb_012653_010 Hb_107078_010 Hb_107078_010 Hb_000042_390--Hb_107078_010 Hb_000494_010 Hb_000494_010 Hb_000042_390--Hb_000494_010 Hb_002435_090 Hb_002435_090 Hb_001343_120--Hb_002435_090 Hb_001975_050 Hb_001975_050 Hb_001343_120--Hb_001975_050 Hb_000207_140 Hb_000207_140 Hb_001343_120--Hb_000207_140 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_002540_060 Hb_002540_060 Hb_001343_120--Hb_002540_060 Hb_001536_020--Hb_001347_030 Hb_000753_170 Hb_000753_170 Hb_001536_020--Hb_000753_170 Hb_010863_030 Hb_010863_030 Hb_001536_020--Hb_010863_030 Hb_001536_020--Hb_012653_010 Hb_173029_030 Hb_173029_030 Hb_001536_020--Hb_173029_030 Hb_001347_030--Hb_010863_030 Hb_000061_430 Hb_000061_430 Hb_001347_030--Hb_000061_430 Hb_029432_010 Hb_029432_010 Hb_001347_030--Hb_029432_010 Hb_007574_020 Hb_007574_020 Hb_001347_030--Hb_007574_020 Hb_024973_020 Hb_024973_020 Hb_012653_010--Hb_024973_020 Hb_012653_010--Hb_004218_050 Hb_012653_010--Hb_001343_120 Hb_003935_090 Hb_003935_090 Hb_012653_010--Hb_003935_090 Hb_011918_030 Hb_011918_030 Hb_107078_010--Hb_011918_030 Hb_008173_130 Hb_008173_130 Hb_107078_010--Hb_008173_130 Hb_000260_240 Hb_000260_240 Hb_107078_010--Hb_000260_240 Hb_001638_120 Hb_001638_120 Hb_107078_010--Hb_001638_120 Hb_000020_080 Hb_000020_080 Hb_107078_010--Hb_000020_080 Hb_000076_090 Hb_000076_090 Hb_107078_010--Hb_000076_090 Hb_005116_130 Hb_005116_130 Hb_000494_010--Hb_005116_130 Hb_000110_240 Hb_000110_240 Hb_000494_010--Hb_000110_240 Hb_046590_010 Hb_046590_010 Hb_000494_010--Hb_046590_010 Hb_001579_190 Hb_001579_190 Hb_000494_010--Hb_001579_190 Hb_003077_010 Hb_003077_010 Hb_000494_010--Hb_003077_010 Hb_000500_330 Hb_000500_330 Hb_000494_010--Hb_000500_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.42 12.0361 113.901 25.0302 1.53387 4.65141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.36025 1.06578 0.50996 4.3159 30.9103

CAGE analysis