Hb_173029_030

Information

Type -
Description -
Location Contig173029: 10604-13898
Sequence    

Annotation

kegg
ID rcu:RCOM_1186680
description hypothetical protein
nr
ID XP_002527453.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LK56
description Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2
trembl
ID B9SN84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1186680 PE=4 SV=1
Gene Ontology
ID GO:0003824
description transcriptional activator demeter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16487: 10883-13779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173029_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001536_020 0.1488268403 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
3 Hb_001638_120 0.1506325707 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
4 Hb_022092_040 0.1533788643 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
5 Hb_000308_010 0.1609090605 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
6 Hb_000042_390 0.1748667932 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
7 Hb_008250_020 0.1829130454 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
8 Hb_001235_160 0.1839136843 - - conserved hypothetical protein [Ricinus communis]
9 Hb_107078_010 0.185202163 - - -
10 Hb_000390_020 0.1858783056 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
11 Hb_000809_140 0.1901469976 - - hypothetical protein JCGZ_12354 [Jatropha curcas]
12 Hb_012653_010 0.1914026775 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
13 Hb_000032_200 0.1920709923 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
14 Hb_007545_110 0.1933733811 - - catalytic, putative [Ricinus communis]
15 Hb_000753_170 0.1942656818 - - conserved hypothetical protein [Ricinus communis]
16 Hb_028487_120 0.1962264848 - - PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]
17 Hb_006775_070 0.2006848827 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000960_120 0.2017521119 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
19 Hb_001347_030 0.2019943042 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_004109_250 0.2020135459 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_173029_030 Hb_173029_030 Hb_001536_020 Hb_001536_020 Hb_173029_030--Hb_001536_020 Hb_001638_120 Hb_001638_120 Hb_173029_030--Hb_001638_120 Hb_022092_040 Hb_022092_040 Hb_173029_030--Hb_022092_040 Hb_000308_010 Hb_000308_010 Hb_173029_030--Hb_000308_010 Hb_000042_390 Hb_000042_390 Hb_173029_030--Hb_000042_390 Hb_008250_020 Hb_008250_020 Hb_173029_030--Hb_008250_020 Hb_001536_020--Hb_000042_390 Hb_001347_030 Hb_001347_030 Hb_001536_020--Hb_001347_030 Hb_000753_170 Hb_000753_170 Hb_001536_020--Hb_000753_170 Hb_010863_030 Hb_010863_030 Hb_001536_020--Hb_010863_030 Hb_012653_010 Hb_012653_010 Hb_001536_020--Hb_012653_010 Hb_011918_030 Hb_011918_030 Hb_001638_120--Hb_011918_030 Hb_004223_080 Hb_004223_080 Hb_001638_120--Hb_004223_080 Hb_001025_140 Hb_001025_140 Hb_001638_120--Hb_001025_140 Hb_003688_220 Hb_003688_220 Hb_001638_120--Hb_003688_220 Hb_000134_260 Hb_000134_260 Hb_001638_120--Hb_000134_260 Hb_107078_010 Hb_107078_010 Hb_001638_120--Hb_107078_010 Hb_000960_120 Hb_000960_120 Hb_022092_040--Hb_000960_120 Hb_007545_110 Hb_007545_110 Hb_022092_040--Hb_007545_110 Hb_001761_010 Hb_001761_010 Hb_022092_040--Hb_001761_010 Hb_028487_120 Hb_028487_120 Hb_022092_040--Hb_028487_120 Hb_000260_610 Hb_000260_610 Hb_022092_040--Hb_000260_610 Hb_002218_050 Hb_002218_050 Hb_022092_040--Hb_002218_050 Hb_008173_130 Hb_008173_130 Hb_000308_010--Hb_008173_130 Hb_004712_090 Hb_004712_090 Hb_000308_010--Hb_004712_090 Hb_000308_010--Hb_011918_030 Hb_000308_010--Hb_000134_260 Hb_015531_010 Hb_015531_010 Hb_000308_010--Hb_015531_010 Hb_002965_070 Hb_002965_070 Hb_000308_010--Hb_002965_070 Hb_001343_120 Hb_001343_120 Hb_000042_390--Hb_001343_120 Hb_000042_390--Hb_001347_030 Hb_000042_390--Hb_012653_010 Hb_000042_390--Hb_107078_010 Hb_000494_010 Hb_000494_010 Hb_000042_390--Hb_000494_010 Hb_006153_010 Hb_006153_010 Hb_008250_020--Hb_006153_010 Hb_002897_010 Hb_002897_010 Hb_008250_020--Hb_002897_010 Hb_001235_160 Hb_001235_160 Hb_008250_020--Hb_001235_160 Hb_000395_120 Hb_000395_120 Hb_008250_020--Hb_000395_120 Hb_008250_020--Hb_000260_610 Hb_002463_050 Hb_002463_050 Hb_008250_020--Hb_002463_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.70216 6.44445 27.9466 6.81994 1.50691 0.395407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0724698 0.114019 0.106541 1.16278 3.73516

CAGE analysis