Hb_002965_070

Information

Type -
Description -
Location Contig2965: 56607-57122
Sequence    

Annotation

kegg
ID brp:103870092
description leucine-rich repeat extensin-like protein 1
nr
ID XP_012084016.1
description PREDICTED: extensin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7S9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18954 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31021: 56427-56806 , PASA_asmbl_31022: 56815-57605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_070 0.0 - - PREDICTED: extensin [Jatropha curcas]
2 Hb_047442_010 0.1007187316 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
3 Hb_089114_010 0.122780503 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
4 Hb_000317_190 0.1379628928 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
5 Hb_000563_510 0.1406761732 - - epoxide hydrolase, putative [Ricinus communis]
6 Hb_000308_010 0.1474878721 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
7 Hb_033930_010 0.1527691868 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
8 Hb_001776_200 0.1528600278 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
9 Hb_001894_160 0.161494403 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011671_110 0.162035078 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
11 Hb_032202_050 0.1627217337 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
12 Hb_061908_030 0.1630264249 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
13 Hb_008020_020 0.1721279913 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
14 Hb_001627_010 0.1727956397 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
15 Hb_000221_230 0.173159135 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
16 Hb_065755_020 0.1755414173 - - choline monooxygenase, putative [Ricinus communis]
17 Hb_000111_390 0.175650632 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
18 Hb_005394_010 0.1765885094 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
19 Hb_002030_110 0.1775573053 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
20 Hb_005941_020 0.1779841298 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002965_070 Hb_002965_070 Hb_047442_010 Hb_047442_010 Hb_002965_070--Hb_047442_010 Hb_089114_010 Hb_089114_010 Hb_002965_070--Hb_089114_010 Hb_000317_190 Hb_000317_190 Hb_002965_070--Hb_000317_190 Hb_000563_510 Hb_000563_510 Hb_002965_070--Hb_000563_510 Hb_000308_010 Hb_000308_010 Hb_002965_070--Hb_000308_010 Hb_033930_010 Hb_033930_010 Hb_002965_070--Hb_033930_010 Hb_011671_110 Hb_011671_110 Hb_047442_010--Hb_011671_110 Hb_005394_010 Hb_005394_010 Hb_047442_010--Hb_005394_010 Hb_047442_010--Hb_000317_190 Hb_000111_390 Hb_000111_390 Hb_047442_010--Hb_000111_390 Hb_001894_160 Hb_001894_160 Hb_047442_010--Hb_001894_160 Hb_061908_030 Hb_061908_030 Hb_089114_010--Hb_061908_030 Hb_089114_010--Hb_033930_010 Hb_089114_010--Hb_047442_010 Hb_089114_010--Hb_000317_190 Hb_089114_010--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_000317_190--Hb_005941_020 Hb_124951_010 Hb_124951_010 Hb_000317_190--Hb_124951_010 Hb_000317_190--Hb_001894_160 Hb_000317_190--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_000317_190--Hb_015026_020 Hb_002960_100 Hb_002960_100 Hb_000563_510--Hb_002960_100 Hb_006694_030 Hb_006694_030 Hb_000563_510--Hb_006694_030 Hb_000563_510--Hb_089114_010 Hb_004837_200 Hb_004837_200 Hb_000563_510--Hb_004837_200 Hb_086614_010 Hb_086614_010 Hb_000563_510--Hb_086614_010 Hb_008173_130 Hb_008173_130 Hb_000308_010--Hb_008173_130 Hb_004712_090 Hb_004712_090 Hb_000308_010--Hb_004712_090 Hb_011918_030 Hb_011918_030 Hb_000308_010--Hb_011918_030 Hb_000134_260 Hb_000134_260 Hb_000308_010--Hb_000134_260 Hb_015531_010 Hb_015531_010 Hb_000308_010--Hb_015531_010 Hb_033930_010--Hb_005941_020 Hb_033930_010--Hb_001894_160 Hb_033930_010--Hb_011671_110 Hb_000318_410 Hb_000318_410 Hb_033930_010--Hb_000318_410 Hb_000622_210 Hb_000622_210 Hb_033930_010--Hb_000622_210 Hb_000086_640 Hb_000086_640 Hb_033930_010--Hb_000086_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8409 99.4346 143.952 28.3367 14.3841 5.56088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04014 2.60465 1.36627 14.3689 19.0448

CAGE analysis