Hb_000318_410

Information

Type -
Description -
Location Contig318: 390925-401156
Sequence    

Annotation

kegg
ID rcu:RCOM_0938850
description GTP-binding protein alpha subunit, gna, putative
nr
ID XP_012069273.1
description PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
swissprot
ID O80462
description Extra-large guanine nucleotide-binding protein 1 OS=Arabidopsis thaliana GN=XLG1 PE=1 SV=2
trembl
ID A0A067LCJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10031 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33561: 390900-400795 , PASA_asmbl_33564: 400826-401032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_410 0.0 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
2 Hb_000753_140 0.0943971409 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
3 Hb_033930_010 0.0947957082 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
4 Hb_132840_020 0.1144966465 - - PREDICTED: protein LHY [Jatropha curcas]
5 Hb_000622_210 0.1151445845 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
6 Hb_002639_130 0.1159471159 - - hypothetical protein JCGZ_08129 [Jatropha curcas]
7 Hb_000086_640 0.1160385125 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_000035_490 0.1306550142 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
9 Hb_001386_020 0.1314674506 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007193_030 0.1331069501 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
11 Hb_000086_620 0.1368080226 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
12 Hb_001369_020 0.1381092907 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
13 Hb_015807_080 0.1399843555 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
14 Hb_001894_160 0.1408632676 - - conserved hypothetical protein [Ricinus communis]
15 Hb_161901_020 0.1413889778 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
16 Hb_027402_100 0.1414102897 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
17 Hb_011381_070 0.1419680062 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
18 Hb_011930_120 0.1427078662 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
19 Hb_002910_010 0.1437287263 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
20 Hb_004218_080 0.1453000751 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_410 Hb_000318_410 Hb_000753_140 Hb_000753_140 Hb_000318_410--Hb_000753_140 Hb_033930_010 Hb_033930_010 Hb_000318_410--Hb_033930_010 Hb_132840_020 Hb_132840_020 Hb_000318_410--Hb_132840_020 Hb_000622_210 Hb_000622_210 Hb_000318_410--Hb_000622_210 Hb_002639_130 Hb_002639_130 Hb_000318_410--Hb_002639_130 Hb_000086_640 Hb_000086_640 Hb_000318_410--Hb_000086_640 Hb_002804_010 Hb_002804_010 Hb_000753_140--Hb_002804_010 Hb_000753_140--Hb_000086_640 Hb_001386_020 Hb_001386_020 Hb_000753_140--Hb_001386_020 Hb_015807_080 Hb_015807_080 Hb_000753_140--Hb_015807_080 Hb_000753_140--Hb_132840_020 Hb_005941_020 Hb_005941_020 Hb_033930_010--Hb_005941_020 Hb_001894_160 Hb_001894_160 Hb_033930_010--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_033930_010--Hb_011671_110 Hb_033930_010--Hb_000622_210 Hb_033930_010--Hb_000086_640 Hb_001294_050 Hb_001294_050 Hb_132840_020--Hb_001294_050 Hb_132840_020--Hb_000086_640 Hb_048476_040 Hb_048476_040 Hb_132840_020--Hb_048476_040 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_000329_790 Hb_000329_790 Hb_132840_020--Hb_000329_790 Hb_000622_210--Hb_001894_160 Hb_161901_020 Hb_161901_020 Hb_000622_210--Hb_161901_020 Hb_000928_250 Hb_000928_250 Hb_000622_210--Hb_000928_250 Hb_000622_210--Hb_005941_020 Hb_002639_130--Hb_033930_010 Hb_002639_130--Hb_000086_640 Hb_000836_580 Hb_000836_580 Hb_002639_130--Hb_000836_580 Hb_000035_490 Hb_000035_490 Hb_002639_130--Hb_000035_490 Hb_002997_110 Hb_002997_110 Hb_002639_130--Hb_002997_110 Hb_000086_640--Hb_000035_490 Hb_000086_640--Hb_015807_080 Hb_000086_640--Hb_005941_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95637 33.0948 27.5001 7.73353 2.06126 2.41378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50258 1.91086 1.97777 4.26197 14.2511

CAGE analysis