Hb_000836_580

Information

Type -
Description -
Location Contig836: 459971-460860
Sequence    

Annotation

kegg
ID rcu:RCOM_1617010
description hypothetical protein
nr
ID XP_002511933.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDZ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1617010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_580 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000622_210 0.1333792088 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
3 Hb_033930_010 0.1401085416 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
4 Hb_005941_020 0.1502920803 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
5 Hb_001894_160 0.1508541658 - - conserved hypothetical protein [Ricinus communis]
6 Hb_161901_020 0.1560426034 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
7 Hb_002639_130 0.1600314665 - - hypothetical protein JCGZ_08129 [Jatropha curcas]
8 Hb_000086_640 0.1607758007 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
9 Hb_000318_410 0.1624204261 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
10 Hb_003106_240 0.1750396698 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
11 Hb_161549_010 0.1755731239 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003001_070 0.176630197 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
13 Hb_090782_010 0.1773574814 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
14 Hb_015807_080 0.1791681211 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
15 Hb_000753_140 0.1804191124 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
16 Hb_005694_130 0.1808557817 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
17 Hb_000609_110 0.1810194132 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
18 Hb_000805_200 0.1815010246 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
19 Hb_000928_250 0.1833489764 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_002030_110 0.1897419111 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]

Gene co-expression network

sample Hb_000836_580 Hb_000836_580 Hb_000622_210 Hb_000622_210 Hb_000836_580--Hb_000622_210 Hb_033930_010 Hb_033930_010 Hb_000836_580--Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_000836_580--Hb_005941_020 Hb_001894_160 Hb_001894_160 Hb_000836_580--Hb_001894_160 Hb_161901_020 Hb_161901_020 Hb_000836_580--Hb_161901_020 Hb_002639_130 Hb_002639_130 Hb_000836_580--Hb_002639_130 Hb_000622_210--Hb_001894_160 Hb_000622_210--Hb_033930_010 Hb_000622_210--Hb_161901_020 Hb_000928_250 Hb_000928_250 Hb_000622_210--Hb_000928_250 Hb_000318_410 Hb_000318_410 Hb_000622_210--Hb_000318_410 Hb_000622_210--Hb_005941_020 Hb_033930_010--Hb_005941_020 Hb_033930_010--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_033930_010--Hb_011671_110 Hb_033930_010--Hb_000318_410 Hb_000086_640 Hb_000086_640 Hb_033930_010--Hb_000086_640 Hb_005941_020--Hb_001894_160 Hb_005941_020--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_005941_020--Hb_000086_640 Hb_001894_160--Hb_011671_110 Hb_001894_160--Hb_000928_250 Hb_001894_160--Hb_015026_020 Hb_161901_020--Hb_033930_010 Hb_161901_020--Hb_001894_160 Hb_161901_020--Hb_005941_020 Hb_161901_020--Hb_000086_640 Hb_000421_230 Hb_000421_230 Hb_161901_020--Hb_000421_230 Hb_002639_130--Hb_000318_410 Hb_002639_130--Hb_033930_010 Hb_002639_130--Hb_000086_640 Hb_000035_490 Hb_000035_490 Hb_002639_130--Hb_000035_490 Hb_002997_110 Hb_002997_110 Hb_002639_130--Hb_002997_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.760848 2.51208 2.23467 0.506312 0.19436 0.19284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155622 0.244692 0.109496 0.124299 1.33539

CAGE analysis