Hb_002639_130

Information

Type -
Description -
Location Contig2639: 132935-133306
Sequence    

Annotation

kegg
ID tcc:TCM_034344
description SAUR-like auxin-responsive protein family, putative
nr
ID KDP36838.1
description hypothetical protein JCGZ_08129 [Jatropha curcas]
swissprot
ID B7F8P5
description Auxin-responsive protein SAUR36 OS=Oryza sativa subsp. japonica GN=SAUR39 PE=2 SV=1
trembl
ID A0A067KPB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08129 PE=4 SV=1
Gene Ontology
ID GO:0005739
description saur-like auxin-responsive protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27572: 132839-133650
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_130 0.0 - - hypothetical protein JCGZ_08129 [Jatropha curcas]
2 Hb_000318_410 0.1159471159 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
3 Hb_033930_010 0.1366663392 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
4 Hb_000086_640 0.1424066038 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
5 Hb_000836_580 0.1600314665 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000035_490 0.1626613831 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
7 Hb_002997_110 0.1632835168 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
8 Hb_001386_020 0.1666233273 - - conserved hypothetical protein [Ricinus communis]
9 Hb_132840_020 0.1672701933 - - PREDICTED: protein LHY [Jatropha curcas]
10 Hb_000753_140 0.1681234745 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
11 Hb_003106_240 0.1738241185 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
12 Hb_002073_020 0.1755589939 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
13 Hb_002910_010 0.1756352998 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
14 Hb_000402_090 0.1766466453 - - Lipase [Glycine soja]
15 Hb_015807_080 0.1782589235 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
16 Hb_000622_210 0.1797959451 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
17 Hb_161901_020 0.1798814157 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
18 Hb_011381_070 0.1808156088 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
19 Hb_000453_280 0.1820728948 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
20 Hb_001894_160 0.1832924744 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002639_130 Hb_002639_130 Hb_000318_410 Hb_000318_410 Hb_002639_130--Hb_000318_410 Hb_033930_010 Hb_033930_010 Hb_002639_130--Hb_033930_010 Hb_000086_640 Hb_000086_640 Hb_002639_130--Hb_000086_640 Hb_000836_580 Hb_000836_580 Hb_002639_130--Hb_000836_580 Hb_000035_490 Hb_000035_490 Hb_002639_130--Hb_000035_490 Hb_002997_110 Hb_002997_110 Hb_002639_130--Hb_002997_110 Hb_000753_140 Hb_000753_140 Hb_000318_410--Hb_000753_140 Hb_000318_410--Hb_033930_010 Hb_132840_020 Hb_132840_020 Hb_000318_410--Hb_132840_020 Hb_000622_210 Hb_000622_210 Hb_000318_410--Hb_000622_210 Hb_000318_410--Hb_000086_640 Hb_005941_020 Hb_005941_020 Hb_033930_010--Hb_005941_020 Hb_001894_160 Hb_001894_160 Hb_033930_010--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_033930_010--Hb_011671_110 Hb_033930_010--Hb_000622_210 Hb_033930_010--Hb_000086_640 Hb_000086_640--Hb_000035_490 Hb_000086_640--Hb_132840_020 Hb_015807_080 Hb_015807_080 Hb_000086_640--Hb_015807_080 Hb_000086_640--Hb_005941_020 Hb_000086_640--Hb_000753_140 Hb_000836_580--Hb_000622_210 Hb_000836_580--Hb_033930_010 Hb_000836_580--Hb_005941_020 Hb_000836_580--Hb_001894_160 Hb_161901_020 Hb_161901_020 Hb_000836_580--Hb_161901_020 Hb_011381_070 Hb_011381_070 Hb_000035_490--Hb_011381_070 Hb_001021_100 Hb_001021_100 Hb_000035_490--Hb_001021_100 Hb_000035_490--Hb_132840_020 Hb_001863_340 Hb_001863_340 Hb_000035_490--Hb_001863_340 Hb_000035_490--Hb_011671_110 Hb_002609_290 Hb_002609_290 Hb_002997_110--Hb_002609_290 Hb_002997_110--Hb_001863_340 Hb_002997_110--Hb_011381_070 Hb_007224_010 Hb_007224_010 Hb_002997_110--Hb_007224_010 Hb_001386_020 Hb_001386_020 Hb_002997_110--Hb_001386_020 Hb_002997_110--Hb_000035_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94513 67.3265 59.9882 12.4169 6.72781 2.38009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.920201 8.49446 1.12934 9.13093 36.1981

CAGE analysis