Hb_000308_010

Information

Type -
Description -
Location Contig308: 26730-30621
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11210g
description POPTRDRAFT_832346; hypothetical protein
nr
ID XP_012079206.1
description PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12370 PE=4 SV=1
Gene Ontology
ID GO:0008146
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32527: 26842-27804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000308_010 0.0 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
2 Hb_008173_130 0.132152635 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
3 Hb_004712_090 0.1359918149 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
4 Hb_011918_030 0.1381263989 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
5 Hb_000134_260 0.1429695786 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_015531_010 0.1457757688 - - PREDICTED: uncharacterized protein LOC105636764 [Jatropha curcas]
7 Hb_002965_070 0.1474878721 - - PREDICTED: extensin [Jatropha curcas]
8 Hb_001638_120 0.1523243307 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
9 Hb_022092_040 0.1569867354 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
10 Hb_173029_030 0.1609090605 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003688_220 0.1643202294 - - unknown [Populus trichocarpa]
12 Hb_001235_160 0.166780028 - - conserved hypothetical protein [Ricinus communis]
13 Hb_107078_010 0.1674870001 - - -
14 Hb_000046_520 0.1686198206 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
15 Hb_008775_030 0.1739277537 - - PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Jatropha curcas]
16 Hb_000809_140 0.1770028473 - - hypothetical protein JCGZ_12354 [Jatropha curcas]
17 Hb_001627_010 0.1798036677 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
18 Hb_001021_100 0.1803043443 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
19 Hb_004411_050 0.1819958858 - - quinone oxidoreductase-like protein [Arabidopsis thaliana]
20 Hb_001769_120 0.1837047389 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]

Gene co-expression network

sample Hb_000308_010 Hb_000308_010 Hb_008173_130 Hb_008173_130 Hb_000308_010--Hb_008173_130 Hb_004712_090 Hb_004712_090 Hb_000308_010--Hb_004712_090 Hb_011918_030 Hb_011918_030 Hb_000308_010--Hb_011918_030 Hb_000134_260 Hb_000134_260 Hb_000308_010--Hb_000134_260 Hb_015531_010 Hb_015531_010 Hb_000308_010--Hb_015531_010 Hb_002965_070 Hb_002965_070 Hb_000308_010--Hb_002965_070 Hb_008173_130--Hb_011918_030 Hb_000260_240 Hb_000260_240 Hb_008173_130--Hb_000260_240 Hb_107078_010 Hb_107078_010 Hb_008173_130--Hb_107078_010 Hb_028487_040 Hb_028487_040 Hb_008173_130--Hb_028487_040 Hb_003688_220 Hb_003688_220 Hb_008173_130--Hb_003688_220 Hb_004712_090--Hb_000134_260 Hb_000392_170 Hb_000392_170 Hb_004712_090--Hb_000392_170 Hb_004970_070 Hb_004970_070 Hb_004712_090--Hb_004970_070 Hb_000059_030 Hb_000059_030 Hb_004712_090--Hb_000059_030 Hb_000856_230 Hb_000856_230 Hb_004712_090--Hb_000856_230 Hb_001638_120 Hb_001638_120 Hb_011918_030--Hb_001638_120 Hb_011918_030--Hb_003688_220 Hb_011918_030--Hb_107078_010 Hb_011918_030--Hb_000134_260 Hb_001366_390 Hb_001366_390 Hb_011918_030--Hb_001366_390 Hb_004551_010 Hb_004551_010 Hb_000134_260--Hb_004551_010 Hb_000134_260--Hb_003688_220 Hb_002374_200 Hb_002374_200 Hb_000134_260--Hb_002374_200 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_000046_520 Hb_000046_520 Hb_015531_010--Hb_000046_520 Hb_003038_110 Hb_003038_110 Hb_015531_010--Hb_003038_110 Hb_008775_030 Hb_008775_030 Hb_015531_010--Hb_008775_030 Hb_004109_250 Hb_004109_250 Hb_015531_010--Hb_004109_250 Hb_000041_260 Hb_000041_260 Hb_015531_010--Hb_000041_260 Hb_047442_010 Hb_047442_010 Hb_002965_070--Hb_047442_010 Hb_089114_010 Hb_089114_010 Hb_002965_070--Hb_089114_010 Hb_000317_190 Hb_000317_190 Hb_002965_070--Hb_000317_190 Hb_000563_510 Hb_000563_510 Hb_002965_070--Hb_000563_510 Hb_033930_010 Hb_033930_010 Hb_002965_070--Hb_033930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.478878 7.1484 19.2216 4.07356 1.26195 0.441402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.037435 0.147242 0.109928 1.69669 2.75246

CAGE analysis