Hb_000041_260

Information

Type -
Description -
Location Contig41: 379942-381717
Sequence    

Annotation

kegg
ID fve:101307688
description calumenin-B-like
nr
ID XP_012068579.1
description PREDICTED: reticulocalbin-2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24476 PE=4 SV=1
Gene Ontology
ID GO:0005783
description calcium-binding ef hand family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_260 0.0 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
2 Hb_001579_190 0.1876658188 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004218_050 0.1880529557 - - annexin [Manihot esculenta]
4 Hb_001934_040 0.1895849031 - - PREDICTED: vacuolar iron transporter 1-like [Jatropha curcas]
5 Hb_010683_070 0.1920232033 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
6 Hb_006615_220 0.1997816097 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
7 Hb_000343_010 0.2000144948 - - F3F9.11 [Arabidopsis thaliana]
8 Hb_024973_020 0.2000765548 - - Protein regulator of cytokinesis, putative [Ricinus communis]
9 Hb_015531_010 0.2012753187 - - PREDICTED: uncharacterized protein LOC105636764 [Jatropha curcas]
10 Hb_008643_220 0.2017505975 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
11 Hb_022092_040 0.20529797 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
12 Hb_000046_520 0.2072218383 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
13 Hb_000110_240 0.2076039302 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
14 Hb_012691_010 0.2080170717 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
15 Hb_007643_060 0.2093923259 - - -
16 Hb_002095_050 0.2099089853 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
17 Hb_065133_010 0.210886488 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
18 Hb_002942_120 0.2118329648 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
19 Hb_000907_140 0.2120590617 - - PREDICTED: annexin D5-like [Jatropha curcas]
20 Hb_007943_180 0.2127922301 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]

Gene co-expression network

sample Hb_000041_260 Hb_000041_260 Hb_001579_190 Hb_001579_190 Hb_000041_260--Hb_001579_190 Hb_004218_050 Hb_004218_050 Hb_000041_260--Hb_004218_050 Hb_001934_040 Hb_001934_040 Hb_000041_260--Hb_001934_040 Hb_010683_070 Hb_010683_070 Hb_000041_260--Hb_010683_070 Hb_006615_220 Hb_006615_220 Hb_000041_260--Hb_006615_220 Hb_000343_010 Hb_000343_010 Hb_000041_260--Hb_000343_010 Hb_000110_240 Hb_000110_240 Hb_001579_190--Hb_000110_240 Hb_008643_220 Hb_008643_220 Hb_001579_190--Hb_008643_220 Hb_000494_010 Hb_000494_010 Hb_001579_190--Hb_000494_010 Hb_005116_130 Hb_005116_130 Hb_001579_190--Hb_005116_130 Hb_010407_150 Hb_010407_150 Hb_001579_190--Hb_010407_150 Hb_001579_190--Hb_010683_070 Hb_002942_120 Hb_002942_120 Hb_004218_050--Hb_002942_120 Hb_024973_020 Hb_024973_020 Hb_004218_050--Hb_024973_020 Hb_004218_050--Hb_010683_070 Hb_012653_010 Hb_012653_010 Hb_004218_050--Hb_012653_010 Hb_001343_120 Hb_001343_120 Hb_004218_050--Hb_001343_120 Hb_004223_170 Hb_004223_170 Hb_004218_050--Hb_004223_170 Hb_002081_060 Hb_002081_060 Hb_001934_040--Hb_002081_060 Hb_001761_010 Hb_001761_010 Hb_001934_040--Hb_001761_010 Hb_000334_120 Hb_000334_120 Hb_001934_040--Hb_000334_120 Hb_000907_140 Hb_000907_140 Hb_001934_040--Hb_000907_140 Hb_001934_040--Hb_000343_010 Hb_000664_080 Hb_000664_080 Hb_001934_040--Hb_000664_080 Hb_010683_070--Hb_004223_170 Hb_007952_050 Hb_007952_050 Hb_010683_070--Hb_007952_050 Hb_010863_030 Hb_010863_030 Hb_010683_070--Hb_010863_030 Hb_007101_270 Hb_007101_270 Hb_010683_070--Hb_007101_270 Hb_007643_060 Hb_007643_060 Hb_006615_220--Hb_007643_060 Hb_000035_150 Hb_000035_150 Hb_006615_220--Hb_000035_150 Hb_005743_010 Hb_005743_010 Hb_006615_220--Hb_005743_010 Hb_006615_220--Hb_000343_010 Hb_006266_010 Hb_006266_010 Hb_006615_220--Hb_006266_010 Hb_001310_060 Hb_001310_060 Hb_006615_220--Hb_001310_060 Hb_000343_010--Hb_000035_150 Hb_000343_010--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_000343_010--Hb_007951_020 Hb_004607_020 Hb_004607_020 Hb_000343_010--Hb_004607_020 Hb_003626_020 Hb_003626_020 Hb_000343_010--Hb_003626_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115383 0.45445 4.31344 0.632114 0.338983 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.164415 0 0.778954 0.859328

CAGE analysis