Hb_000664_080

Information

Type -
Description -
Location Contig664: 184516-189564
Sequence    

Annotation

kegg
ID rcu:RCOM_0801560
description malic enzyme, putative (EC:1.1.1.40)
nr
ID XP_012077392.1
description PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
swissprot
ID P51615
description NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1
trembl
ID A0A067KPG4
description Malic enzyme OS=Jatropha curcas GN=JCGZ_07741 PE=3 SV=1
Gene Ontology
ID GO:0004471
description nadp-dependent malic enzyme isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53139: 184489-189699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000664_080 0.0 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
2 Hb_002170_060 0.0821770173 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
3 Hb_008643_220 0.0874799557 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
4 Hb_004459_030 0.0966851452 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
5 Hb_002243_030 0.1003534832 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
6 Hb_000032_080 0.1041688496 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
7 Hb_003626_020 0.1063544564 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
8 Hb_003777_260 0.1164267514 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
9 Hb_000421_060 0.1188275531 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
10 Hb_000265_100 0.1202279611 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]
11 Hb_002205_160 0.1231952269 - - chalcone isomerase [Hibiscus cannabinus]
12 Hb_015299_040 0.1235795041 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
13 Hb_007951_020 0.1242895646 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
14 Hb_028903_010 0.1246561794 - - hypothetical protein JCGZ_09851 [Jatropha curcas]
15 Hb_002081_060 0.1255024484 - - cyclin d, putative [Ricinus communis]
16 Hb_000343_010 0.1257378364 - - F3F9.11 [Arabidopsis thaliana]
17 Hb_023344_100 0.1272840564 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
18 Hb_004109_100 0.1279706829 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
19 Hb_002918_220 0.1299020772 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
20 Hb_001357_160 0.1306064338 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000664_080 Hb_000664_080 Hb_002170_060 Hb_002170_060 Hb_000664_080--Hb_002170_060 Hb_008643_220 Hb_008643_220 Hb_000664_080--Hb_008643_220 Hb_004459_030 Hb_004459_030 Hb_000664_080--Hb_004459_030 Hb_002243_030 Hb_002243_030 Hb_000664_080--Hb_002243_030 Hb_000032_080 Hb_000032_080 Hb_000664_080--Hb_000032_080 Hb_003626_020 Hb_003626_020 Hb_000664_080--Hb_003626_020 Hb_002170_060--Hb_008643_220 Hb_002170_060--Hb_002243_030 Hb_005568_140 Hb_005568_140 Hb_002170_060--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_002170_060--Hb_004109_100 Hb_002918_220 Hb_002918_220 Hb_002170_060--Hb_002918_220 Hb_001579_190 Hb_001579_190 Hb_008643_220--Hb_001579_190 Hb_008643_220--Hb_002243_030 Hb_000343_010 Hb_000343_010 Hb_008643_220--Hb_000343_010 Hb_003992_130 Hb_003992_130 Hb_008643_220--Hb_003992_130 Hb_002473_030 Hb_002473_030 Hb_004459_030--Hb_002473_030 Hb_004459_030--Hb_000032_080 Hb_005649_050 Hb_005649_050 Hb_004459_030--Hb_005649_050 Hb_004007_080 Hb_004007_080 Hb_004459_030--Hb_004007_080 Hb_011063_030 Hb_011063_030 Hb_004459_030--Hb_011063_030 Hb_023344_100 Hb_023344_100 Hb_002243_030--Hb_023344_100 Hb_015299_040 Hb_015299_040 Hb_002243_030--Hb_015299_040 Hb_001357_160 Hb_001357_160 Hb_002243_030--Hb_001357_160 Hb_002243_030--Hb_004109_100 Hb_003777_260 Hb_003777_260 Hb_002243_030--Hb_003777_260 Hb_162378_020 Hb_162378_020 Hb_000032_080--Hb_162378_020 Hb_000032_080--Hb_011063_030 Hb_001220_020 Hb_001220_020 Hb_000032_080--Hb_001220_020 Hb_064396_010 Hb_064396_010 Hb_000032_080--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_000032_080--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260 Hb_000205_180 Hb_000205_180 Hb_003626_020--Hb_000205_180 Hb_003626_020--Hb_003992_130 Hb_004607_020 Hb_004607_020 Hb_003626_020--Hb_004607_020 Hb_000035_150 Hb_000035_150 Hb_003626_020--Hb_000035_150 Hb_027337_010 Hb_027337_010 Hb_003626_020--Hb_027337_010 Hb_001310_060 Hb_001310_060 Hb_003626_020--Hb_001310_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187261 1.29113 42.7038 8.44696 0.0358922 0.0983685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0856194 0.0673691 0.0319783 4.44053 5.20382

CAGE analysis