Hb_086614_010

Information

Type transcription factor
Description TF Family: Orphans
Location Contig86614: 8828-10076
Sequence    

Annotation

kegg
ID rcu:RCOM_0506950
description hypothetical protein
nr
ID XP_012092499.1
description PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LJB7
description B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1
trembl
ID A0A067LJZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19761 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61001: 8814-9960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086614_010 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
2 Hb_018633_010 0.0957435607 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_077694_010 0.1043766715 - - uncharacterized protein LOC100305624 [Glycine max]
4 Hb_000111_240 0.1190016563 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
5 Hb_006615_060 0.1231480561 - - conserved hypothetical protein [Ricinus communis]
6 Hb_074672_010 0.127192076 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_164146_020 0.1357110309 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_001361_010 0.144457259 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
9 Hb_001660_080 0.1447032726 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
10 Hb_120011_010 0.1450267267 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_140000_010 0.1462056752 - - receptor-kinase, putative [Ricinus communis]
12 Hb_000359_260 0.1472779845 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
13 Hb_005599_020 0.1479853916 - - Protein MLO, putative [Ricinus communis]
14 Hb_002107_110 0.1496041688 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
15 Hb_000035_140 0.1530903185 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
16 Hb_017693_040 0.1534625239 - - tyrosine kinase family protein [Medicago truncatula]
17 Hb_002311_160 0.1555217221 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
18 Hb_155896_010 0.1581602712 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
19 Hb_127372_010 0.1602552424 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
20 Hb_092458_010 0.1636981197 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_086614_010 Hb_086614_010 Hb_018633_010 Hb_018633_010 Hb_086614_010--Hb_018633_010 Hb_077694_010 Hb_077694_010 Hb_086614_010--Hb_077694_010 Hb_000111_240 Hb_000111_240 Hb_086614_010--Hb_000111_240 Hb_006615_060 Hb_006615_060 Hb_086614_010--Hb_006615_060 Hb_074672_010 Hb_074672_010 Hb_086614_010--Hb_074672_010 Hb_164146_020 Hb_164146_020 Hb_086614_010--Hb_164146_020 Hb_018633_010--Hb_000111_240 Hb_140000_010 Hb_140000_010 Hb_018633_010--Hb_140000_010 Hb_001581_040 Hb_001581_040 Hb_018633_010--Hb_001581_040 Hb_005599_020 Hb_005599_020 Hb_018633_010--Hb_005599_020 Hb_018633_010--Hb_077694_010 Hb_121540_010 Hb_121540_010 Hb_077694_010--Hb_121540_010 Hb_017693_040 Hb_017693_040 Hb_077694_010--Hb_017693_040 Hb_005381_010 Hb_005381_010 Hb_077694_010--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_077694_010--Hb_000069_530 Hb_001660_080 Hb_001660_080 Hb_077694_010--Hb_001660_080 Hb_120011_010 Hb_120011_010 Hb_077694_010--Hb_120011_010 Hb_000111_240--Hb_001581_040 Hb_000111_240--Hb_140000_010 Hb_000771_040 Hb_000771_040 Hb_000111_240--Hb_000771_040 Hb_000111_240--Hb_077694_010 Hb_006615_060--Hb_164146_020 Hb_001153_250 Hb_001153_250 Hb_006615_060--Hb_001153_250 Hb_006615_060--Hb_005381_010 Hb_006615_060--Hb_074672_010 Hb_006615_060--Hb_077694_010 Hb_006615_060--Hb_120011_010 Hb_074672_010--Hb_120011_010 Hb_074672_010--Hb_077694_010 Hb_000959_240 Hb_000959_240 Hb_074672_010--Hb_000959_240 Hb_074672_010--Hb_017693_040 Hb_001619_140 Hb_001619_140 Hb_074672_010--Hb_001619_140 Hb_001310_010 Hb_001310_010 Hb_164146_020--Hb_001310_010 Hb_008202_020 Hb_008202_020 Hb_164146_020--Hb_008202_020 Hb_164146_020--Hb_120011_010 Hb_002311_160 Hb_002311_160 Hb_164146_020--Hb_002311_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.459047 128.807 188.127 19.7772 0.714577 0.375946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131266 0.034417 0.0638103 13.1275 21.5741

CAGE analysis