Hb_018633_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig18633: 5890-9844
Sequence    

Annotation

kegg
ID rcu:RCOM_0855110
description WRKY transcription factor, putative
nr
ID XP_002517481.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9LXG8
description Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1
trembl
ID B9RUN6
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0855110 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018633_010 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_000111_240 0.0465550838 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
3 Hb_140000_010 0.0757586426 - - receptor-kinase, putative [Ricinus communis]
4 Hb_086614_010 0.0957435607 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
5 Hb_001581_040 0.1187484178 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_005599_020 0.1201457805 - - Protein MLO, putative [Ricinus communis]
7 Hb_077694_010 0.1307462303 - - uncharacterized protein LOC100305624 [Glycine max]
8 Hb_000035_140 0.1330412643 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
9 Hb_034585_070 0.1336978944 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
10 Hb_002107_110 0.1374029466 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
11 Hb_092458_010 0.1423895383 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_000771_040 0.1491686436 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
13 Hb_001001_010 0.1527774765 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
14 Hb_000152_410 0.1575826784 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
15 Hb_000359_260 0.1587086302 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
16 Hb_000836_420 0.1599088375 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_001660_080 0.1610638811 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
18 Hb_001160_050 0.1641238401 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
19 Hb_004551_010 0.1674895865 - - tryptophan synthase beta chain, putative [Ricinus communis]
20 Hb_017693_040 0.1702670846 - - tyrosine kinase family protein [Medicago truncatula]

Gene co-expression network

sample Hb_018633_010 Hb_018633_010 Hb_000111_240 Hb_000111_240 Hb_018633_010--Hb_000111_240 Hb_140000_010 Hb_140000_010 Hb_018633_010--Hb_140000_010 Hb_086614_010 Hb_086614_010 Hb_018633_010--Hb_086614_010 Hb_001581_040 Hb_001581_040 Hb_018633_010--Hb_001581_040 Hb_005599_020 Hb_005599_020 Hb_018633_010--Hb_005599_020 Hb_077694_010 Hb_077694_010 Hb_018633_010--Hb_077694_010 Hb_000111_240--Hb_001581_040 Hb_000111_240--Hb_140000_010 Hb_000771_040 Hb_000771_040 Hb_000111_240--Hb_000771_040 Hb_000111_240--Hb_086614_010 Hb_000111_240--Hb_077694_010 Hb_034585_070 Hb_034585_070 Hb_140000_010--Hb_034585_070 Hb_140000_010--Hb_005599_020 Hb_031685_010 Hb_031685_010 Hb_140000_010--Hb_031685_010 Hb_006789_030 Hb_006789_030 Hb_140000_010--Hb_006789_030 Hb_086614_010--Hb_077694_010 Hb_006615_060 Hb_006615_060 Hb_086614_010--Hb_006615_060 Hb_074672_010 Hb_074672_010 Hb_086614_010--Hb_074672_010 Hb_164146_020 Hb_164146_020 Hb_086614_010--Hb_164146_020 Hb_001581_040--Hb_000771_040 Hb_042098_010 Hb_042098_010 Hb_001581_040--Hb_042098_010 Hb_002995_010 Hb_002995_010 Hb_001581_040--Hb_002995_010 Hb_002107_110 Hb_002107_110 Hb_001581_040--Hb_002107_110 Hb_005599_020--Hb_034585_070 Hb_065256_010 Hb_065256_010 Hb_005599_020--Hb_065256_010 Hb_000035_140 Hb_000035_140 Hb_005599_020--Hb_000035_140 Hb_005599_020--Hb_000111_240 Hb_121540_010 Hb_121540_010 Hb_077694_010--Hb_121540_010 Hb_017693_040 Hb_017693_040 Hb_077694_010--Hb_017693_040 Hb_005381_010 Hb_005381_010 Hb_077694_010--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_077694_010--Hb_000069_530 Hb_001660_080 Hb_001660_080 Hb_077694_010--Hb_001660_080 Hb_120011_010 Hb_120011_010 Hb_077694_010--Hb_120011_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.42012 2.62513 0.336209 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.30364 0.411488

CAGE analysis