Hb_065256_010

Information

Type -
Description -
Location Contig65256: 1976-4463
Sequence    

Annotation

kegg
ID rcu:RCOM_0905390
description tryptophan synthase beta chain, putative (EC:1.3.1.74)
nr
ID XP_002518519.1
description tryptophan synthase beta chain, putative [Ricinus communis]
swissprot
ID O50046
description Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1
trembl
ID B9RXQ0
description Tryptophan synthase beta chain, putative OS=Ricinus communis GN=RCOM_0905390 PE=3 SV=1
Gene Ontology
ID GO:0004834
description tryptophan synthase beta chain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065256_010 0.0 - - tryptophan synthase beta chain, putative [Ricinus communis]
2 Hb_005511_080 0.1203039319 - - Protein MLO, putative [Ricinus communis]
3 Hb_005599_020 0.1231131152 - - Protein MLO, putative [Ricinus communis]
4 Hb_034585_070 0.1297868808 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
5 Hb_005888_060 0.1317101275 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
6 Hb_000479_340 0.1329405932 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
7 Hb_103709_010 0.1401989322 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
8 Hb_135714_010 0.1469924738 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
9 Hb_002477_170 0.148158032 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_007254_010 0.1493894515 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
11 Hb_104014_010 0.154733439 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
12 Hb_149985_030 0.1547884402 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
13 Hb_005888_050 0.1557231522 - - ATP binding protein, putative [Ricinus communis]
14 Hb_033834_020 0.1563236363 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003349_020 0.1568141557 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
16 Hb_023904_010 0.1598347731 - - -
17 Hb_000349_170 0.1645484456 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
18 Hb_001913_070 0.1656052192 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
19 Hb_005227_030 0.1698378607 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
20 Hb_012084_010 0.1717327892 - - cold regulated protein [Manihot esculenta]

Gene co-expression network

sample Hb_065256_010 Hb_065256_010 Hb_005511_080 Hb_005511_080 Hb_065256_010--Hb_005511_080 Hb_005599_020 Hb_005599_020 Hb_065256_010--Hb_005599_020 Hb_034585_070 Hb_034585_070 Hb_065256_010--Hb_034585_070 Hb_005888_060 Hb_005888_060 Hb_065256_010--Hb_005888_060 Hb_000479_340 Hb_000479_340 Hb_065256_010--Hb_000479_340 Hb_103709_010 Hb_103709_010 Hb_065256_010--Hb_103709_010 Hb_001218_060 Hb_001218_060 Hb_005511_080--Hb_001218_060 Hb_104014_010 Hb_104014_010 Hb_005511_080--Hb_104014_010 Hb_001123_340 Hb_001123_340 Hb_005511_080--Hb_001123_340 Hb_002561_040 Hb_002561_040 Hb_005511_080--Hb_002561_040 Hb_005511_080--Hb_005888_060 Hb_005599_020--Hb_034585_070 Hb_140000_010 Hb_140000_010 Hb_005599_020--Hb_140000_010 Hb_018633_010 Hb_018633_010 Hb_005599_020--Hb_018633_010 Hb_000035_140 Hb_000035_140 Hb_005599_020--Hb_000035_140 Hb_000111_240 Hb_000111_240 Hb_005599_020--Hb_000111_240 Hb_034585_070--Hb_140000_010 Hb_006789_030 Hb_006789_030 Hb_034585_070--Hb_006789_030 Hb_031685_010 Hb_031685_010 Hb_034585_070--Hb_031685_010 Hb_005888_050 Hb_005888_050 Hb_034585_070--Hb_005888_050 Hb_000386_010 Hb_000386_010 Hb_005888_060--Hb_000386_010 Hb_005227_030 Hb_005227_030 Hb_005888_060--Hb_005227_030 Hb_005305_140 Hb_005305_140 Hb_005888_060--Hb_005305_140 Hb_005888_060--Hb_002561_040 Hb_007254_010 Hb_007254_010 Hb_005888_060--Hb_007254_010 Hb_000479_340--Hb_005888_060 Hb_000479_340--Hb_005511_080 Hb_023904_010 Hb_023904_010 Hb_000479_340--Hb_023904_010 Hb_000479_340--Hb_000386_010 Hb_000479_340--Hb_002561_040 Hb_012084_010 Hb_012084_010 Hb_103709_010--Hb_012084_010 Hb_149985_030 Hb_149985_030 Hb_103709_010--Hb_149985_030 Hb_008059_040 Hb_008059_040 Hb_103709_010--Hb_008059_040 Hb_022406_010 Hb_022406_010 Hb_103709_010--Hb_022406_010 Hb_103709_010--Hb_001218_060 Hb_001606_040 Hb_001606_040 Hb_103709_010--Hb_001606_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.180505 0.771476 0.0456233 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.010396 0.217324

CAGE analysis