Hb_000479_340

Information

Type -
Description -
Location Contig479: 240806-242404
Sequence    

Annotation

kegg
ID rcu:RCOM_0169160
description hypothetical protein
nr
ID XP_012084764.1
description PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19893 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44662: 240769-241995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_340 0.0 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
2 Hb_065256_010 0.1329405932 - - tryptophan synthase beta chain, putative [Ricinus communis]
3 Hb_005888_060 0.1330249551 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
4 Hb_005511_080 0.133973739 - - Protein MLO, putative [Ricinus communis]
5 Hb_023904_010 0.1491173403 - - -
6 Hb_000386_010 0.1581247837 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002561_040 0.1583733283 - - Photosynthetic electron transfer C [Theobroma cacao]
8 Hb_033834_020 0.1603845969 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000445_310 0.1637626757 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
10 Hb_007254_010 0.1642038548 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
11 Hb_031862_160 0.1645503639 - - unnamed protein product [Vitis vinifera]
12 Hb_001442_050 0.170759621 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
13 Hb_005116_130 0.1721234696 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
14 Hb_000928_100 0.1722846006 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
15 Hb_001916_110 0.1726119578 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
16 Hb_005305_140 0.1735724352 - - unknown [Populus trichocarpa]
17 Hb_002027_100 0.1743705753 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000188_070 0.1749205903 - - calcineurin-like phosphoesterase [Manihot esculenta]
19 Hb_046590_010 0.1757473153 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
20 Hb_033312_120 0.1761391144 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000479_340 Hb_000479_340 Hb_065256_010 Hb_065256_010 Hb_000479_340--Hb_065256_010 Hb_005888_060 Hb_005888_060 Hb_000479_340--Hb_005888_060 Hb_005511_080 Hb_005511_080 Hb_000479_340--Hb_005511_080 Hb_023904_010 Hb_023904_010 Hb_000479_340--Hb_023904_010 Hb_000386_010 Hb_000386_010 Hb_000479_340--Hb_000386_010 Hb_002561_040 Hb_002561_040 Hb_000479_340--Hb_002561_040 Hb_065256_010--Hb_005511_080 Hb_005599_020 Hb_005599_020 Hb_065256_010--Hb_005599_020 Hb_034585_070 Hb_034585_070 Hb_065256_010--Hb_034585_070 Hb_065256_010--Hb_005888_060 Hb_103709_010 Hb_103709_010 Hb_065256_010--Hb_103709_010 Hb_005888_060--Hb_000386_010 Hb_005227_030 Hb_005227_030 Hb_005888_060--Hb_005227_030 Hb_005305_140 Hb_005305_140 Hb_005888_060--Hb_005305_140 Hb_005888_060--Hb_002561_040 Hb_007254_010 Hb_007254_010 Hb_005888_060--Hb_007254_010 Hb_005888_060--Hb_005511_080 Hb_001218_060 Hb_001218_060 Hb_005511_080--Hb_001218_060 Hb_104014_010 Hb_104014_010 Hb_005511_080--Hb_104014_010 Hb_001123_340 Hb_001123_340 Hb_005511_080--Hb_001123_340 Hb_005511_080--Hb_002561_040 Hb_001953_110 Hb_001953_110 Hb_023904_010--Hb_001953_110 Hb_023904_010--Hb_005227_030 Hb_023904_010--Hb_007254_010 Hb_000252_240 Hb_000252_240 Hb_023904_010--Hb_000252_240 Hb_003337_020 Hb_003337_020 Hb_023904_010--Hb_003337_020 Hb_023904_010--Hb_000386_010 Hb_000386_010--Hb_005305_140 Hb_000928_100 Hb_000928_100 Hb_000386_010--Hb_000928_100 Hb_004109_140 Hb_004109_140 Hb_000386_010--Hb_004109_140 Hb_022167_010 Hb_022167_010 Hb_000386_010--Hb_022167_010 Hb_001662_090 Hb_001662_090 Hb_000386_010--Hb_001662_090 Hb_000084_210 Hb_000084_210 Hb_002561_040--Hb_000084_210 Hb_011716_140 Hb_011716_140 Hb_002561_040--Hb_011716_140 Hb_002561_040--Hb_000928_100 Hb_002078_280 Hb_002078_280 Hb_002561_040--Hb_002078_280 Hb_002561_040--Hb_000386_010 Hb_001916_110 Hb_001916_110 Hb_002561_040--Hb_001916_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.510014 13.2662 91.4519 2.51517 0.0632916 0.372186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389054 0.122346 0.218992 1.51645 36.2983

CAGE analysis