Hb_023904_010

Information

Type -
Description -
Location Contig23904: 4418-5366
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25043: 3748-6175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023904_010 0.0 - - -
2 Hb_001953_110 0.083250435 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
3 Hb_005227_030 0.0972423406 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
4 Hb_007254_010 0.1044299745 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
5 Hb_000252_240 0.1050101297 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
6 Hb_003337_020 0.1172953913 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
7 Hb_000386_010 0.1181029249 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002025_220 0.1189308262 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_000483_470 0.1211578107 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
10 Hb_005305_140 0.1212236726 - - unknown [Populus trichocarpa]
11 Hb_004109_140 0.1214680138 - - conserved hypothetical protein [Ricinus communis]
12 Hb_061126_010 0.1255079001 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_005888_050 0.127831549 - - ATP binding protein, putative [Ricinus communis]
14 Hb_135714_010 0.1285223902 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
15 Hb_003349_020 0.1287764021 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
16 Hb_005888_060 0.1288548161 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
17 Hb_003777_090 0.1315174447 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
18 Hb_001544_060 0.131957611 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
19 Hb_063405_010 0.1369494827 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
20 Hb_001040_090 0.1389954508 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]

Gene co-expression network

sample Hb_023904_010 Hb_023904_010 Hb_001953_110 Hb_001953_110 Hb_023904_010--Hb_001953_110 Hb_005227_030 Hb_005227_030 Hb_023904_010--Hb_005227_030 Hb_007254_010 Hb_007254_010 Hb_023904_010--Hb_007254_010 Hb_000252_240 Hb_000252_240 Hb_023904_010--Hb_000252_240 Hb_003337_020 Hb_003337_020 Hb_023904_010--Hb_003337_020 Hb_000386_010 Hb_000386_010 Hb_023904_010--Hb_000386_010 Hb_001040_090 Hb_001040_090 Hb_001953_110--Hb_001040_090 Hb_001953_110--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_001953_110--Hb_002010_030 Hb_004109_140 Hb_004109_140 Hb_001953_110--Hb_004109_140 Hb_002818_160 Hb_002818_160 Hb_001953_110--Hb_002818_160 Hb_005227_030--Hb_004109_140 Hb_005227_030--Hb_000386_010 Hb_005305_140 Hb_005305_140 Hb_005227_030--Hb_005305_140 Hb_005888_060 Hb_005888_060 Hb_005227_030--Hb_005888_060 Hb_000692_060 Hb_000692_060 Hb_007254_010--Hb_000692_060 Hb_033834_020 Hb_033834_020 Hb_007254_010--Hb_033834_020 Hb_000188_070 Hb_000188_070 Hb_007254_010--Hb_000188_070 Hb_000928_100 Hb_000928_100 Hb_007254_010--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_007254_010--Hb_022167_010 Hb_003777_090 Hb_003777_090 Hb_007254_010--Hb_003777_090 Hb_001544_060 Hb_001544_060 Hb_000252_240--Hb_001544_060 Hb_000300_070 Hb_000300_070 Hb_000252_240--Hb_000300_070 Hb_003453_060 Hb_003453_060 Hb_000252_240--Hb_003453_060 Hb_000445_310 Hb_000445_310 Hb_000252_240--Hb_000445_310 Hb_001638_190 Hb_001638_190 Hb_000252_240--Hb_001638_190 Hb_000265_170 Hb_000265_170 Hb_003337_020--Hb_000265_170 Hb_063405_010 Hb_063405_010 Hb_003337_020--Hb_063405_010 Hb_000697_020 Hb_000697_020 Hb_003337_020--Hb_000697_020 Hb_003337_020--Hb_001544_060 Hb_005888_050 Hb_005888_050 Hb_003337_020--Hb_005888_050 Hb_001898_100 Hb_001898_100 Hb_003337_020--Hb_001898_100 Hb_000386_010--Hb_005305_140 Hb_000386_010--Hb_000928_100 Hb_000386_010--Hb_004109_140 Hb_000386_010--Hb_022167_010 Hb_000386_010--Hb_005888_060 Hb_001662_090 Hb_001662_090 Hb_000386_010--Hb_001662_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.6122 20.592 1.84723 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0601088 0.0472687 0 0.915749 13.5857

CAGE analysis