Hb_001953_110

Information

Type -
Description -
Location Contig1953: 118199-120397
Sequence    

Annotation

kegg
ID tcc:TCM_014700
description Tapetum determinant 1
nr
ID XP_012090642.1
description PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
swissprot
ID Q6TLJ2
description Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1
trembl
ID A0A067JIC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26409 PE=4 SV=1
Gene Ontology
ID GO:0001709
description protein tapetum determinant 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001953_110 0.0 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
2 Hb_023904_010 0.083250435 - - -
3 Hb_001040_090 0.095746288 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
4 Hb_005227_030 0.0960253331 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
5 Hb_002010_030 0.1037337164 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
6 Hb_004109_140 0.1097012896 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002818_160 0.1159089407 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
8 Hb_003767_060 0.118262311 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
9 Hb_000834_170 0.118344679 - - polygalacturonase, putative [Ricinus communis]
10 Hb_002025_220 0.1184305408 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
11 Hb_006106_010 0.1202466972 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
12 Hb_131719_010 0.1203363792 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
13 Hb_002307_120 0.120625931 - - scab resistance family protein [Populus trichocarpa]
14 Hb_000705_010 0.1215415174 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
15 Hb_061126_010 0.1235482891 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
16 Hb_046739_010 0.1247271177 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
17 Hb_003970_010 0.1254713782 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
18 Hb_063405_010 0.1272426926 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
19 Hb_000483_470 0.1286767576 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_003337_020 0.130046078 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]

Gene co-expression network

sample Hb_001953_110 Hb_001953_110 Hb_023904_010 Hb_023904_010 Hb_001953_110--Hb_023904_010 Hb_001040_090 Hb_001040_090 Hb_001953_110--Hb_001040_090 Hb_005227_030 Hb_005227_030 Hb_001953_110--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_001953_110--Hb_002010_030 Hb_004109_140 Hb_004109_140 Hb_001953_110--Hb_004109_140 Hb_002818_160 Hb_002818_160 Hb_001953_110--Hb_002818_160 Hb_023904_010--Hb_005227_030 Hb_007254_010 Hb_007254_010 Hb_023904_010--Hb_007254_010 Hb_000252_240 Hb_000252_240 Hb_023904_010--Hb_000252_240 Hb_003337_020 Hb_003337_020 Hb_023904_010--Hb_003337_020 Hb_000386_010 Hb_000386_010 Hb_023904_010--Hb_000386_010 Hb_000039_190 Hb_000039_190 Hb_001040_090--Hb_000039_190 Hb_131719_010 Hb_131719_010 Hb_001040_090--Hb_131719_010 Hb_003349_020 Hb_003349_020 Hb_001040_090--Hb_003349_020 Hb_010904_010 Hb_010904_010 Hb_001040_090--Hb_010904_010 Hb_001040_090--Hb_023904_010 Hb_005227_030--Hb_004109_140 Hb_005227_030--Hb_000386_010 Hb_005305_140 Hb_005305_140 Hb_005227_030--Hb_005305_140 Hb_005888_060 Hb_005888_060 Hb_005227_030--Hb_005888_060 Hb_003767_060 Hb_003767_060 Hb_002010_030--Hb_003767_060 Hb_004017_030 Hb_004017_030 Hb_002010_030--Hb_004017_030 Hb_001369_340 Hb_001369_340 Hb_002010_030--Hb_001369_340 Hb_002010_030--Hb_004109_140 Hb_046739_010 Hb_046739_010 Hb_002010_030--Hb_046739_010 Hb_005433_020 Hb_005433_020 Hb_002010_030--Hb_005433_020 Hb_004109_140--Hb_005305_140 Hb_000834_170 Hb_000834_170 Hb_004109_140--Hb_000834_170 Hb_004109_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_004109_140--Hb_001864_050 Hb_000483_470 Hb_000483_470 Hb_004109_140--Hb_000483_470 Hb_002307_120 Hb_002307_120 Hb_002818_160--Hb_002307_120 Hb_002818_160--Hb_003767_060 Hb_000031_320 Hb_000031_320 Hb_002818_160--Hb_000031_320 Hb_000186_180 Hb_000186_180 Hb_002818_160--Hb_000186_180 Hb_003209_150 Hb_003209_150 Hb_002818_160--Hb_003209_150 Hb_003654_020 Hb_003654_020 Hb_002818_160--Hb_003654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.44975 1.12061 0.143149 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0465783 1.03548

CAGE analysis