Hb_140000_010

Information

Type -
Description -
Location Contig140000: 1686-2655
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002517677.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lrr receptor-like serine threonine-protein kinase efr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140000_010 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_034585_070 0.0745753061 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
3 Hb_018633_010 0.0757586426 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_005599_020 0.105115838 - - Protein MLO, putative [Ricinus communis]
5 Hb_000111_240 0.1064433815 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
6 Hb_031685_010 0.110966826 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_006789_030 0.1234347542 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
8 Hb_000035_140 0.1326843459 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
9 Hb_005888_050 0.1414227171 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002596_090 0.1423185167 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
11 Hb_010407_150 0.1440225603 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
12 Hb_028487_040 0.1451634114 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
13 Hb_086614_010 0.1462056752 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
14 Hb_000732_160 0.147476033 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
15 Hb_001001_010 0.1476286926 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
16 Hb_000152_410 0.1480278917 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
17 Hb_135714_010 0.1545948942 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
18 Hb_029095_010 0.1606242587 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
19 Hb_001581_040 0.1640565276 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_001918_030 0.1650002255 - - -

Gene co-expression network

sample Hb_140000_010 Hb_140000_010 Hb_034585_070 Hb_034585_070 Hb_140000_010--Hb_034585_070 Hb_018633_010 Hb_018633_010 Hb_140000_010--Hb_018633_010 Hb_005599_020 Hb_005599_020 Hb_140000_010--Hb_005599_020 Hb_000111_240 Hb_000111_240 Hb_140000_010--Hb_000111_240 Hb_031685_010 Hb_031685_010 Hb_140000_010--Hb_031685_010 Hb_006789_030 Hb_006789_030 Hb_140000_010--Hb_006789_030 Hb_034585_070--Hb_005599_020 Hb_034585_070--Hb_006789_030 Hb_034585_070--Hb_031685_010 Hb_065256_010 Hb_065256_010 Hb_034585_070--Hb_065256_010 Hb_005888_050 Hb_005888_050 Hb_034585_070--Hb_005888_050 Hb_018633_010--Hb_000111_240 Hb_086614_010 Hb_086614_010 Hb_018633_010--Hb_086614_010 Hb_001581_040 Hb_001581_040 Hb_018633_010--Hb_001581_040 Hb_018633_010--Hb_005599_020 Hb_077694_010 Hb_077694_010 Hb_018633_010--Hb_077694_010 Hb_005599_020--Hb_065256_010 Hb_000035_140 Hb_000035_140 Hb_005599_020--Hb_000035_140 Hb_005599_020--Hb_000111_240 Hb_000111_240--Hb_001581_040 Hb_000771_040 Hb_000771_040 Hb_000111_240--Hb_000771_040 Hb_000111_240--Hb_086614_010 Hb_000111_240--Hb_077694_010 Hb_031685_010--Hb_006789_030 Hb_029095_010 Hb_029095_010 Hb_031685_010--Hb_029095_010 Hb_000732_160 Hb_000732_160 Hb_031685_010--Hb_000732_160 Hb_031685_010--Hb_005888_050 Hb_003337_020 Hb_003337_020 Hb_031685_010--Hb_003337_020 Hb_094439_010 Hb_094439_010 Hb_031685_010--Hb_094439_010 Hb_010407_150 Hb_010407_150 Hb_006789_030--Hb_010407_150 Hb_006789_030--Hb_029095_010 Hb_001544_060 Hb_001544_060 Hb_006789_030--Hb_001544_060 Hb_001898_100 Hb_001898_100 Hb_006789_030--Hb_001898_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.175377 0.362576 0.0450165 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0382139 0.0958055

CAGE analysis