Hb_002218_050

Information

Type -
Description -
Location Contig2218: 73462-79025
Sequence    

Annotation

kegg
ID pop:POPTR_0019s02320g
description GRF1-INTERACTING FACTOR 1 family protein
nr
ID XP_007030496.1
description SSXT family protein isoform 2, partial [Theobroma cacao]
swissprot
ID Q8L8A5
description GRF1-interacting factor 1 OS=Arabidopsis thaliana GN=GIF1 PE=1 SV=1
trembl
ID A0A061F252
description SSXT family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_026261 PE=4 SV=1
Gene Ontology
ID GO:0003713
description grf1-interacting factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22978: 73429-78994 , PASA_asmbl_22979: 78998-79217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_050 0.0 - - SSXT family protein isoform 2, partial [Theobroma cacao]
2 Hb_000388_040 0.1162306092 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
3 Hb_114292_010 0.1319305757 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001040_050 0.1391904694 - - Stem-specific protein TSJT1, putative [Ricinus communis]
5 Hb_005162_120 0.1412340062 - - ferric reductase oxidase [Manihot esculenta]
6 Hb_001143_200 0.1429342767 transcription factor TF Family: NAC NAC domain protein [Glycine max]
7 Hb_000115_190 0.147484769 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
8 Hb_022092_040 0.1483401412 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
9 Hb_007441_290 0.1498182682 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
10 Hb_000142_030 0.1520177843 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_001606_040 0.1524407255 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
12 Hb_001761_010 0.156331824 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
13 Hb_006519_020 0.1618208959 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_004650_040 0.1664812565 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
15 Hb_002221_010 0.1675589614 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
16 Hb_022406_010 0.1681773856 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_007632_200 0.1685822931 - - hypothetical protein L484_018221 [Morus notabilis]
18 Hb_004459_030 0.1689723492 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
19 Hb_001279_050 0.1693303666 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
20 Hb_012753_150 0.1718564725 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002218_050 Hb_002218_050 Hb_000388_040 Hb_000388_040 Hb_002218_050--Hb_000388_040 Hb_114292_010 Hb_114292_010 Hb_002218_050--Hb_114292_010 Hb_001040_050 Hb_001040_050 Hb_002218_050--Hb_001040_050 Hb_005162_120 Hb_005162_120 Hb_002218_050--Hb_005162_120 Hb_001143_200 Hb_001143_200 Hb_002218_050--Hb_001143_200 Hb_000115_190 Hb_000115_190 Hb_002218_050--Hb_000115_190 Hb_003767_030 Hb_003767_030 Hb_000388_040--Hb_003767_030 Hb_012753_150 Hb_012753_150 Hb_000388_040--Hb_012753_150 Hb_000349_170 Hb_000349_170 Hb_000388_040--Hb_000349_170 Hb_010267_020 Hb_010267_020 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290 Hb_001935_040 Hb_001935_040 Hb_114292_010--Hb_001935_040 Hb_000142_030 Hb_000142_030 Hb_114292_010--Hb_000142_030 Hb_114292_010--Hb_000115_190 Hb_000347_160 Hb_000347_160 Hb_114292_010--Hb_000347_160 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240 Hb_002447_060 Hb_002447_060 Hb_001040_050--Hb_002447_060 Hb_001040_050--Hb_000115_190 Hb_006519_020 Hb_006519_020 Hb_001040_050--Hb_006519_020 Hb_002079_100 Hb_002079_100 Hb_001040_050--Hb_002079_100 Hb_012633_010 Hb_012633_010 Hb_001040_050--Hb_012633_010 Hb_001040_050--Hb_000347_160 Hb_005162_120--Hb_000115_190 Hb_000028_250 Hb_000028_250 Hb_005162_120--Hb_000028_250 Hb_002639_170 Hb_002639_170 Hb_005162_120--Hb_002639_170 Hb_007002_050 Hb_007002_050 Hb_005162_120--Hb_007002_050 Hb_001241_020 Hb_001241_020 Hb_005162_120--Hb_001241_020 Hb_000042_020 Hb_000042_020 Hb_001143_200--Hb_000042_020 Hb_000280_100 Hb_000280_100 Hb_001143_200--Hb_000280_100 Hb_003935_050 Hb_003935_050 Hb_001143_200--Hb_003935_050 Hb_001143_200--Hb_001040_050 Hb_001143_200--Hb_007441_290 Hb_001143_200--Hb_000388_040 Hb_000115_190--Hb_000028_250 Hb_000115_190--Hb_006519_020 Hb_000115_190--Hb_002447_060 Hb_000115_190--Hb_000388_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.935289 3.33684 45.2613 5.48299 0.370698 0.238358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.169375 1.3656 0.0618449 1.215 3.09559

CAGE analysis