Hb_000142_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig142: 75827-77178
Sequence    

Annotation

kegg
ID rcu:RCOM_0202190
description NAC domain-containing protein, putative
nr
ID XP_002533913.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q93VY3
description NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1
trembl
ID B9T6P4
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0202190 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11228: 75528-77153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000142_030 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_003599_060 0.0822684419 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_114292_010 0.1270341287 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007441_290 0.1276263809 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
5 Hb_012753_150 0.1320190277 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
6 Hb_001277_120 0.1388698414 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
7 Hb_001143_200 0.1392692573 transcription factor TF Family: NAC NAC domain protein [Glycine max]
8 Hb_007101_250 0.1471032601 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
9 Hb_000115_190 0.1488824919 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
10 Hb_000347_160 0.148946768 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
11 Hb_000388_040 0.1504120991 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
12 Hb_001935_040 0.1511603007 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
13 Hb_002218_050 0.1520177843 - - SSXT family protein isoform 2, partial [Theobroma cacao]
14 Hb_000152_780 0.1535534809 - - tonoplast intrinsic protein, putative [Ricinus communis]
15 Hb_169753_010 0.1548826444 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
16 Hb_031266_030 0.1578311653 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
17 Hb_001040_050 0.1593148725 - - Stem-specific protein TSJT1, putative [Ricinus communis]
18 Hb_005649_050 0.1593253225 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000028_250 0.1598377642 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
20 Hb_006060_010 0.1612099996 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000142_030 Hb_000142_030 Hb_003599_060 Hb_003599_060 Hb_000142_030--Hb_003599_060 Hb_114292_010 Hb_114292_010 Hb_000142_030--Hb_114292_010 Hb_007441_290 Hb_007441_290 Hb_000142_030--Hb_007441_290 Hb_012753_150 Hb_012753_150 Hb_000142_030--Hb_012753_150 Hb_001277_120 Hb_001277_120 Hb_000142_030--Hb_001277_120 Hb_001143_200 Hb_001143_200 Hb_000142_030--Hb_001143_200 Hb_031266_030 Hb_031266_030 Hb_003599_060--Hb_031266_030 Hb_003599_060--Hb_012753_150 Hb_014497_070 Hb_014497_070 Hb_003599_060--Hb_014497_070 Hb_006060_010 Hb_006060_010 Hb_003599_060--Hb_006060_010 Hb_003878_060 Hb_003878_060 Hb_003599_060--Hb_003878_060 Hb_001935_040 Hb_001935_040 Hb_114292_010--Hb_001935_040 Hb_002218_050 Hb_002218_050 Hb_114292_010--Hb_002218_050 Hb_000115_190 Hb_000115_190 Hb_114292_010--Hb_000115_190 Hb_000347_160 Hb_000347_160 Hb_114292_010--Hb_000347_160 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240 Hb_004650_040 Hb_004650_040 Hb_007441_290--Hb_004650_040 Hb_169753_010 Hb_169753_010 Hb_007441_290--Hb_169753_010 Hb_002205_160 Hb_002205_160 Hb_007441_290--Hb_002205_160 Hb_007441_290--Hb_012753_150 Hb_010267_020 Hb_010267_020 Hb_007441_290--Hb_010267_020 Hb_006519_020 Hb_006519_020 Hb_007441_290--Hb_006519_020 Hb_001761_010 Hb_001761_010 Hb_012753_150--Hb_001761_010 Hb_012753_150--Hb_006060_010 Hb_000388_040 Hb_000388_040 Hb_012753_150--Hb_000388_040 Hb_005568_140 Hb_005568_140 Hb_012753_150--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_012753_150--Hb_004109_100 Hb_012753_150--Hb_010267_020 Hb_000189_350 Hb_000189_350 Hb_001277_120--Hb_000189_350 Hb_001277_120--Hb_007441_290 Hb_001277_120--Hb_004650_040 Hb_001277_120--Hb_114292_010 Hb_001277_120--Hb_001761_010 Hb_000042_020 Hb_000042_020 Hb_001143_200--Hb_000042_020 Hb_000280_100 Hb_000280_100 Hb_001143_200--Hb_000280_100 Hb_003935_050 Hb_003935_050 Hb_001143_200--Hb_003935_050 Hb_001040_050 Hb_001040_050 Hb_001143_200--Hb_001040_050 Hb_001143_200--Hb_007441_290 Hb_001143_200--Hb_000388_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.299264 19.8314 168.521 40.036 0.694783 0.197776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.746646 7.14568 1.39472 7.67517 5.32903

CAGE analysis