Hb_001277_120

Information

Type -
Description -
Location Contig1277: 126704-127943
Sequence    

Annotation

kegg
ID rcu:RCOM_0910780
description calmodulin, putative (EC:1.3.1.74)
nr
ID XP_012069727.1
description PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
swissprot
ID Q9LIK5
description Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1
trembl
ID A0A067L860
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02247 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin-like protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08470: 127023-128134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_120 0.0 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
2 Hb_000189_350 0.1331946295 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
3 Hb_000142_030 0.1388698414 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_007441_290 0.1453150049 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
5 Hb_004650_040 0.1479729185 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
6 Hb_114292_010 0.1563616944 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001761_010 0.1566276837 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
8 Hb_033152_060 0.1584331983 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
9 Hb_000347_160 0.1656896702 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
10 Hb_002205_180 0.168169217 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
11 Hb_007558_110 0.1688865892 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
12 Hb_000365_210 0.169009279 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
13 Hb_027905_040 0.1710167972 transcription factor TF Family: E2F-DP PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
14 Hb_005649_050 0.1720611721 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000028_530 0.1723259357 - - Protein regulator of cytokinesis, putative [Ricinus communis]
16 Hb_001454_180 0.173370374 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
17 Hb_002205_160 0.17513868 - - chalcone isomerase [Hibiscus cannabinus]
18 Hb_007632_200 0.1762969193 - - hypothetical protein L484_018221 [Morus notabilis]
19 Hb_000334_120 0.17659333 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
20 Hb_000227_020 0.1773947818 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]

Gene co-expression network

sample Hb_001277_120 Hb_001277_120 Hb_000189_350 Hb_000189_350 Hb_001277_120--Hb_000189_350 Hb_000142_030 Hb_000142_030 Hb_001277_120--Hb_000142_030 Hb_007441_290 Hb_007441_290 Hb_001277_120--Hb_007441_290 Hb_004650_040 Hb_004650_040 Hb_001277_120--Hb_004650_040 Hb_114292_010 Hb_114292_010 Hb_001277_120--Hb_114292_010 Hb_001761_010 Hb_001761_010 Hb_001277_120--Hb_001761_010 Hb_033152_060 Hb_033152_060 Hb_000189_350--Hb_033152_060 Hb_002205_180 Hb_002205_180 Hb_000189_350--Hb_002205_180 Hb_000316_070 Hb_000316_070 Hb_000189_350--Hb_000316_070 Hb_027905_040 Hb_027905_040 Hb_000189_350--Hb_027905_040 Hb_011849_010 Hb_011849_010 Hb_000189_350--Hb_011849_010 Hb_000028_530 Hb_000028_530 Hb_000189_350--Hb_000028_530 Hb_003599_060 Hb_003599_060 Hb_000142_030--Hb_003599_060 Hb_000142_030--Hb_114292_010 Hb_000142_030--Hb_007441_290 Hb_012753_150 Hb_012753_150 Hb_000142_030--Hb_012753_150 Hb_001143_200 Hb_001143_200 Hb_000142_030--Hb_001143_200 Hb_007441_290--Hb_004650_040 Hb_169753_010 Hb_169753_010 Hb_007441_290--Hb_169753_010 Hb_002205_160 Hb_002205_160 Hb_007441_290--Hb_002205_160 Hb_007441_290--Hb_012753_150 Hb_010267_020 Hb_010267_020 Hb_007441_290--Hb_010267_020 Hb_006519_020 Hb_006519_020 Hb_007441_290--Hb_006519_020 Hb_004650_040--Hb_002205_160 Hb_004650_040--Hb_169753_010 Hb_007632_200 Hb_007632_200 Hb_004650_040--Hb_007632_200 Hb_004650_040--Hb_001143_200 Hb_022406_010 Hb_022406_010 Hb_004650_040--Hb_022406_010 Hb_001935_040 Hb_001935_040 Hb_114292_010--Hb_001935_040 Hb_002218_050 Hb_002218_050 Hb_114292_010--Hb_002218_050 Hb_000115_190 Hb_000115_190 Hb_114292_010--Hb_000115_190 Hb_000347_160 Hb_000347_160 Hb_114292_010--Hb_000347_160 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240 Hb_001761_010--Hb_012753_150 Hb_001761_010--Hb_000028_530 Hb_000365_210 Hb_000365_210 Hb_001761_010--Hb_000365_210 Hb_000960_120 Hb_000960_120 Hb_001761_010--Hb_000960_120 Hb_002232_310 Hb_002232_310 Hb_001761_010--Hb_002232_310 Hb_024973_020 Hb_024973_020 Hb_001761_010--Hb_024973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.592374 2.88718 37.0713 7.70784 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.786789 1.05987 0 3.6023 0.675478

CAGE analysis