Hb_027905_040

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig27905: 22343-25515
Sequence    

Annotation

kegg
ID vvi:100266295
description E2F transcription factor-like E2FF
nr
ID XP_012082422.1
description PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
swissprot
ID Q8RWL0
description E2F transcription factor-like E2FF OS=Arabidopsis thaliana GN=E2FF PE=2 SV=1
trembl
ID A0A067LLZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09673 PE=3 SV=1
Gene Ontology
ID GO:0044424
description e2f transcription factor-like e2ff

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29123: 22426-23384 , PASA_asmbl_29125: 23385-24751 , PASA_asmbl_29126: 23385-24050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027905_040 0.0 transcription factor TF Family: E2F-DP PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
2 Hb_002686_070 0.0845553909 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000316_070 0.0861548766 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
4 Hb_000189_350 0.0889854168 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
5 Hb_000614_200 0.0921508268 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
6 Hb_011849_010 0.0958443936 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
7 Hb_064396_010 0.095883756 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_004225_160 0.0979136249 - - PREDICTED: kiwellin-like [Jatropha curcas]
9 Hb_002374_090 0.0980970302 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
10 Hb_000038_070 0.1017918902 - - conserved hypothetical protein [Ricinus communis]
11 Hb_033152_060 0.1038663971 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
12 Hb_004635_020 0.1039606098 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_007245_030 0.1095306357 - - conserved hypothetical protein [Ricinus communis]
14 Hb_169753_010 0.1103401571 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
15 Hb_004032_390 0.1103684149 - - CDK, putative [Ricinus communis]
16 Hb_119044_040 0.1112716846 - - cyclin B, putative [Ricinus communis]
17 Hb_001998_180 0.1144617744 - - actin binding protein, putative [Ricinus communis]
18 Hb_000085_360 0.1169648864 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
19 Hb_001699_070 0.1174200537 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002918_220 0.1184581259 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]

Gene co-expression network

sample Hb_027905_040 Hb_027905_040 Hb_002686_070 Hb_002686_070 Hb_027905_040--Hb_002686_070 Hb_000316_070 Hb_000316_070 Hb_027905_040--Hb_000316_070 Hb_000189_350 Hb_000189_350 Hb_027905_040--Hb_000189_350 Hb_000614_200 Hb_000614_200 Hb_027905_040--Hb_000614_200 Hb_011849_010 Hb_011849_010 Hb_027905_040--Hb_011849_010 Hb_064396_010 Hb_064396_010 Hb_027905_040--Hb_064396_010 Hb_002686_070--Hb_064396_010 Hb_162378_020 Hb_162378_020 Hb_002686_070--Hb_162378_020 Hb_004032_390 Hb_004032_390 Hb_002686_070--Hb_004032_390 Hb_119044_040 Hb_119044_040 Hb_002686_070--Hb_119044_040 Hb_001220_020 Hb_001220_020 Hb_002686_070--Hb_001220_020 Hb_000032_080 Hb_000032_080 Hb_002686_070--Hb_000032_080 Hb_000316_070--Hb_011849_010 Hb_004635_020 Hb_004635_020 Hb_000316_070--Hb_004635_020 Hb_004963_020 Hb_004963_020 Hb_000316_070--Hb_004963_020 Hb_000316_070--Hb_000614_200 Hb_000316_070--Hb_004032_390 Hb_007245_030 Hb_007245_030 Hb_000316_070--Hb_007245_030 Hb_033152_060 Hb_033152_060 Hb_000189_350--Hb_033152_060 Hb_002205_180 Hb_002205_180 Hb_000189_350--Hb_002205_180 Hb_000189_350--Hb_000316_070 Hb_000189_350--Hb_011849_010 Hb_000028_530 Hb_000028_530 Hb_000189_350--Hb_000028_530 Hb_003776_050 Hb_003776_050 Hb_000614_200--Hb_003776_050 Hb_000614_200--Hb_011849_010 Hb_000614_200--Hb_007245_030 Hb_002374_090 Hb_002374_090 Hb_000614_200--Hb_002374_090 Hb_000614_200--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_000614_200--Hb_003398_050 Hb_011849_010--Hb_003776_050 Hb_011849_010--Hb_002374_090 Hb_000038_070 Hb_000038_070 Hb_011849_010--Hb_000038_070 Hb_011849_010--Hb_119044_040 Hb_064396_010--Hb_162378_020 Hb_000227_020 Hb_000227_020 Hb_064396_010--Hb_000227_020 Hb_064396_010--Hb_001220_020 Hb_064396_010--Hb_000032_080 Hb_011063_030 Hb_011063_030 Hb_064396_010--Hb_011063_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.335097 5.35488 1.89758 0 0.0230778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0483862 0 0 0.428147 0.234175

CAGE analysis