Hb_000189_350

Information

Type transcription factor
Description TF Family: CPP
Location Contig189: 324735-329396
Sequence    

Annotation

kegg
ID rcu:RCOM_1427880
description tso1, putative
nr
ID XP_012089232.1
description PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
swissprot
ID Q9LUI3
description CRC domain-containing protein TSO1 OS=Arabidopsis thaliana GN=TSO1 PE=1 SV=1
trembl
ID A0A067JI62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18683: 324488-328908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_350 0.0 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
2 Hb_033152_060 0.0771216013 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
3 Hb_002205_180 0.0828764898 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
4 Hb_000316_070 0.0844259057 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
5 Hb_027905_040 0.0889854168 transcription factor TF Family: E2F-DP PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
6 Hb_011849_010 0.0901068574 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
7 Hb_000028_530 0.0903729919 - - Protein regulator of cytokinesis, putative [Ricinus communis]
8 Hb_000334_120 0.0910269149 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
9 Hb_002374_090 0.0950993986 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
10 Hb_004102_090 0.0960223748 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
11 Hb_004635_020 0.0967518389 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
12 Hb_002686_070 0.097581306 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000085_360 0.0977251062 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
14 Hb_000038_070 0.0997336074 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001864_040 0.1020915289 - - PREDICTED: kinesin-1 [Jatropha curcas]
16 Hb_080952_060 0.1034349763 - - PREDICTED: patellin-4 [Populus euphratica]
17 Hb_119044_040 0.1067201247 - - cyclin B, putative [Ricinus communis]
18 Hb_004032_390 0.1067584064 - - CDK, putative [Ricinus communis]
19 Hb_002874_010 0.1096092742 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
20 Hb_000614_200 0.1097695538 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000189_350 Hb_000189_350 Hb_033152_060 Hb_033152_060 Hb_000189_350--Hb_033152_060 Hb_002205_180 Hb_002205_180 Hb_000189_350--Hb_002205_180 Hb_000316_070 Hb_000316_070 Hb_000189_350--Hb_000316_070 Hb_027905_040 Hb_027905_040 Hb_000189_350--Hb_027905_040 Hb_011849_010 Hb_011849_010 Hb_000189_350--Hb_011849_010 Hb_000028_530 Hb_000028_530 Hb_000189_350--Hb_000028_530 Hb_001864_040 Hb_001864_040 Hb_033152_060--Hb_001864_040 Hb_033152_060--Hb_000316_070 Hb_033152_060--Hb_002205_180 Hb_033152_060--Hb_027905_040 Hb_004635_020 Hb_004635_020 Hb_033152_060--Hb_004635_020 Hb_004102_090 Hb_004102_090 Hb_002205_180--Hb_004102_090 Hb_000441_210 Hb_000441_210 Hb_002205_180--Hb_000441_210 Hb_010705_040 Hb_010705_040 Hb_002205_180--Hb_010705_040 Hb_006520_030 Hb_006520_030 Hb_002205_180--Hb_006520_030 Hb_000316_070--Hb_011849_010 Hb_000316_070--Hb_004635_020 Hb_004963_020 Hb_004963_020 Hb_000316_070--Hb_004963_020 Hb_000614_200 Hb_000614_200 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_007245_030 Hb_007245_030 Hb_000316_070--Hb_007245_030 Hb_002686_070 Hb_002686_070 Hb_027905_040--Hb_002686_070 Hb_027905_040--Hb_000316_070 Hb_027905_040--Hb_000614_200 Hb_027905_040--Hb_011849_010 Hb_064396_010 Hb_064396_010 Hb_027905_040--Hb_064396_010 Hb_011849_010--Hb_000614_200 Hb_003776_050 Hb_003776_050 Hb_011849_010--Hb_003776_050 Hb_002374_090 Hb_002374_090 Hb_011849_010--Hb_002374_090 Hb_000038_070 Hb_000038_070 Hb_011849_010--Hb_000038_070 Hb_119044_040 Hb_119044_040 Hb_011849_010--Hb_119044_040 Hb_000334_120 Hb_000334_120 Hb_000028_530--Hb_000334_120 Hb_000265_100 Hb_000265_100 Hb_000028_530--Hb_000265_100 Hb_000028_530--Hb_002374_090 Hb_033041_010 Hb_033041_010 Hb_000028_530--Hb_033041_010 Hb_000028_530--Hb_004963_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0751988 0.408434 8.81607 3.1627 0.00888047 0.0239505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0805753 0.095102 0 0.932422 0.369527

CAGE analysis