Hb_003599_060

Information

Type -
Description -
Location Contig3599: 93203-96627
Sequence    

Annotation

kegg
ID rcu:RCOM_1360330
description calmodulin binding protein, putative
nr
ID XP_002532059.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1E0
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_1360330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003599_060 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_000142_030 0.0822684419 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_031266_030 0.1156313082 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
4 Hb_012753_150 0.1255189043 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
5 Hb_014497_070 0.1323882541 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
6 Hb_006060_010 0.1328667873 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
7 Hb_003878_060 0.1339771109 - - hypothetical protein B456_007G326900, partial [Gossypium raimondii]
8 Hb_114292_010 0.1491598969 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008878_010 0.1511134113 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
10 Hb_000028_250 0.1534603133 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
11 Hb_001935_040 0.1551871137 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
12 Hb_000577_050 0.1605801882 - - -
13 Hb_000388_040 0.1633566709 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
14 Hb_000115_190 0.1647176812 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
15 Hb_011360_130 0.1659706538 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000960_120 0.1695599478 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
17 Hb_007441_290 0.1725899083 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
18 Hb_001761_010 0.1726757293 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
19 Hb_007545_110 0.1732627335 - - catalytic, putative [Ricinus communis]
20 Hb_007474_020 0.1742794414 - - multicopper oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003599_060 Hb_003599_060 Hb_000142_030 Hb_000142_030 Hb_003599_060--Hb_000142_030 Hb_031266_030 Hb_031266_030 Hb_003599_060--Hb_031266_030 Hb_012753_150 Hb_012753_150 Hb_003599_060--Hb_012753_150 Hb_014497_070 Hb_014497_070 Hb_003599_060--Hb_014497_070 Hb_006060_010 Hb_006060_010 Hb_003599_060--Hb_006060_010 Hb_003878_060 Hb_003878_060 Hb_003599_060--Hb_003878_060 Hb_114292_010 Hb_114292_010 Hb_000142_030--Hb_114292_010 Hb_007441_290 Hb_007441_290 Hb_000142_030--Hb_007441_290 Hb_000142_030--Hb_012753_150 Hb_001277_120 Hb_001277_120 Hb_000142_030--Hb_001277_120 Hb_001143_200 Hb_001143_200 Hb_000142_030--Hb_001143_200 Hb_031266_030--Hb_012753_150 Hb_031266_030--Hb_006060_010 Hb_031266_030--Hb_014497_070 Hb_031266_030--Hb_003878_060 Hb_000388_040 Hb_000388_040 Hb_031266_030--Hb_000388_040 Hb_001761_010 Hb_001761_010 Hb_012753_150--Hb_001761_010 Hb_012753_150--Hb_006060_010 Hb_012753_150--Hb_000388_040 Hb_005568_140 Hb_005568_140 Hb_012753_150--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_012753_150--Hb_004109_100 Hb_010267_020 Hb_010267_020 Hb_012753_150--Hb_010267_020 Hb_010705_040 Hb_010705_040 Hb_014497_070--Hb_010705_040 Hb_011360_130 Hb_011360_130 Hb_014497_070--Hb_011360_130 Hb_001755_040 Hb_001755_040 Hb_014497_070--Hb_001755_040 Hb_002205_180 Hb_002205_180 Hb_014497_070--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_014497_070--Hb_002232_310 Hb_000441_210 Hb_000441_210 Hb_014497_070--Hb_000441_210 Hb_000260_610 Hb_000260_610 Hb_006060_010--Hb_000260_610 Hb_006060_010--Hb_003878_060 Hb_000960_120 Hb_000960_120 Hb_006060_010--Hb_000960_120 Hb_003119_040 Hb_003119_040 Hb_006060_010--Hb_003119_040 Hb_013344_010 Hb_013344_010 Hb_006060_010--Hb_013344_010 Hb_003878_060--Hb_014497_070 Hb_006289_020 Hb_006289_020 Hb_003878_060--Hb_006289_020 Hb_003878_060--Hb_012753_150 Hb_007474_020 Hb_007474_020 Hb_003878_060--Hb_007474_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0577401 1.46398 10.4675 3.41744 0.0704109 0.0296155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119749 0.50879 0.28545 0.352545 0.397598

CAGE analysis