Hb_003767_030

Information

Type -
Description -
Location Contig3767: 81159-81647
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08830g
description POPTRDRAFT_648111; putative calmodulin-related family protein
nr
ID XP_012077786.1
description PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
swissprot
ID Q9C8Y1
description Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1
trembl
ID A0A067KA96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13426 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003767_030 0.0 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
2 Hb_000388_040 0.1033434664 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
3 Hb_000349_170 0.111841233 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
4 Hb_009421_090 0.1125516717 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
5 Hb_000283_090 0.1199006424 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_010267_020 0.1215332361 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
7 Hb_000809_220 0.1217981747 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
8 Hb_028187_010 0.1277719186 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
9 Hb_000200_270 0.1279594234 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
10 Hb_163140_010 0.1284661826 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
11 Hb_007681_020 0.1303994825 - - transferase, putative [Ricinus communis]
12 Hb_001913_070 0.1343647186 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
13 Hb_000083_280 0.1368005988 - - copper ion binding protein, putative [Ricinus communis]
14 Hb_012753_150 0.141666527 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
15 Hb_006519_020 0.142026985 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_004422_030 0.1437991321 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
17 Hb_014700_020 0.1439685845 - - tryptophan synthase beta chain, putative [Ricinus communis]
18 Hb_005695_070 0.1440076092 - - Cysteine-rich RLK 29 [Theobroma cacao]
19 Hb_000028_250 0.1449375706 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
20 Hb_001153_230 0.1455252779 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]

Gene co-expression network

sample Hb_003767_030 Hb_003767_030 Hb_000388_040 Hb_000388_040 Hb_003767_030--Hb_000388_040 Hb_000349_170 Hb_000349_170 Hb_003767_030--Hb_000349_170 Hb_009421_090 Hb_009421_090 Hb_003767_030--Hb_009421_090 Hb_000283_090 Hb_000283_090 Hb_003767_030--Hb_000283_090 Hb_010267_020 Hb_010267_020 Hb_003767_030--Hb_010267_020 Hb_000809_220 Hb_000809_220 Hb_003767_030--Hb_000809_220 Hb_012753_150 Hb_012753_150 Hb_000388_040--Hb_012753_150 Hb_000388_040--Hb_000349_170 Hb_002218_050 Hb_002218_050 Hb_000388_040--Hb_002218_050 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290 Hb_149985_030 Hb_149985_030 Hb_000349_170--Hb_149985_030 Hb_005695_070 Hb_005695_070 Hb_000349_170--Hb_005695_070 Hb_001913_070 Hb_001913_070 Hb_000349_170--Hb_001913_070 Hb_022406_010 Hb_022406_010 Hb_000349_170--Hb_022406_010 Hb_014700_020 Hb_014700_020 Hb_009421_090--Hb_014700_020 Hb_000856_230 Hb_000856_230 Hb_009421_090--Hb_000856_230 Hb_000200_270 Hb_000200_270 Hb_009421_090--Hb_000200_270 Hb_115962_010 Hb_115962_010 Hb_009421_090--Hb_115962_010 Hb_003207_210 Hb_003207_210 Hb_009421_090--Hb_003207_210 Hb_005357_140 Hb_005357_140 Hb_000283_090--Hb_005357_140 Hb_001301_310 Hb_001301_310 Hb_000283_090--Hb_001301_310 Hb_000083_280 Hb_000083_280 Hb_000283_090--Hb_000083_280 Hb_004422_030 Hb_004422_030 Hb_000283_090--Hb_004422_030 Hb_000527_030 Hb_000527_030 Hb_000283_090--Hb_000527_030 Hb_004003_020 Hb_004003_020 Hb_000283_090--Hb_004003_020 Hb_010267_020--Hb_000200_270 Hb_169753_010 Hb_169753_010 Hb_010267_020--Hb_169753_010 Hb_002918_220 Hb_002918_220 Hb_010267_020--Hb_002918_220 Hb_005568_140 Hb_005568_140 Hb_010267_020--Hb_005568_140 Hb_010267_020--Hb_004422_030 Hb_010267_020--Hb_005695_070 Hb_002121_030 Hb_002121_030 Hb_000809_220--Hb_002121_030 Hb_000051_150 Hb_000051_150 Hb_000809_220--Hb_000051_150 Hb_004308_030 Hb_004308_030 Hb_000809_220--Hb_004308_030 Hb_000809_220--Hb_001913_070 Hb_001983_040 Hb_001983_040 Hb_000809_220--Hb_001983_040 Hb_010422_020 Hb_010422_020 Hb_000809_220--Hb_010422_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07145 60.3328 432.72 107.775 0.171714 1.12184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53166 1.31263 0.368896 0.911419 41.3025

CAGE analysis