Hb_000028_250

Information

Type -
Description -
Location Contig28: 222870-224208
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04970g
description POPTRDRAFT_575041; hypothetical protein
nr
ID XP_012075845.1
description PREDICTED: nudix hydrolase 4 [Jatropha curcas]
swissprot
ID Q9LE73
description Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1
trembl
ID A0A067KF78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11901 PE=3 SV=1
Gene Ontology
ID GO:0005829
description nudix hydrolase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29195: 223364-223639 , PASA_asmbl_29196: 222976-223639 , PASA_asmbl_29197: 223098-223698 , PASA_asmbl_29198: 222862-224233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_250 0.0 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
2 Hb_000115_190 0.1045142898 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
3 Hb_005162_120 0.1339810473 - - ferric reductase oxidase [Manihot esculenta]
4 Hb_001377_340 0.1419181769 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
5 Hb_001755_040 0.1433351089 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
6 Hb_000388_040 0.1437201446 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
7 Hb_003767_030 0.1449375706 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
8 Hb_010705_040 0.1488696637 - - PREDICTED: kinesin-4 [Jatropha curcas]
9 Hb_000283_090 0.1489695801 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000331_300 0.1499784988 - - PREDICTED: malate synthase, glyoxysomal [Jatropha curcas]
11 Hb_000424_050 0.1500103691 - - erecta, putative [Ricinus communis]
12 Hb_012753_150 0.1522834352 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
13 Hb_003599_060 0.1534603133 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_004109_100 0.1538395282 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
15 Hb_000445_320 0.1567599715 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
16 Hb_000527_030 0.1568905101 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
17 Hb_014497_070 0.1580612664 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
18 Hb_002232_310 0.1582128063 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
19 Hb_000028_240 0.1585404754 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000142_030 0.1598377642 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000028_250 Hb_000028_250 Hb_000115_190 Hb_000115_190 Hb_000028_250--Hb_000115_190 Hb_005162_120 Hb_005162_120 Hb_000028_250--Hb_005162_120 Hb_001377_340 Hb_001377_340 Hb_000028_250--Hb_001377_340 Hb_001755_040 Hb_001755_040 Hb_000028_250--Hb_001755_040 Hb_000388_040 Hb_000388_040 Hb_000028_250--Hb_000388_040 Hb_003767_030 Hb_003767_030 Hb_000028_250--Hb_003767_030 Hb_001040_050 Hb_001040_050 Hb_000115_190--Hb_001040_050 Hb_006519_020 Hb_006519_020 Hb_000115_190--Hb_006519_020 Hb_002447_060 Hb_002447_060 Hb_000115_190--Hb_002447_060 Hb_000115_190--Hb_000388_040 Hb_000115_190--Hb_005162_120 Hb_002639_170 Hb_002639_170 Hb_005162_120--Hb_002639_170 Hb_002218_050 Hb_002218_050 Hb_005162_120--Hb_002218_050 Hb_007002_050 Hb_007002_050 Hb_005162_120--Hb_007002_050 Hb_001241_020 Hb_001241_020 Hb_005162_120--Hb_001241_020 Hb_007681_020 Hb_007681_020 Hb_001377_340--Hb_007681_020 Hb_004003_020 Hb_004003_020 Hb_001377_340--Hb_004003_020 Hb_052530_010 Hb_052530_010 Hb_001377_340--Hb_052530_010 Hb_001377_340--Hb_006519_020 Hb_000445_320 Hb_000445_320 Hb_001377_340--Hb_000445_320 Hb_000527_030 Hb_000527_030 Hb_001377_340--Hb_000527_030 Hb_002232_310 Hb_002232_310 Hb_001755_040--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_001755_040--Hb_004109_100 Hb_000936_030 Hb_000936_030 Hb_001755_040--Hb_000936_030 Hb_007574_020 Hb_007574_020 Hb_001755_040--Hb_007574_020 Hb_003935_090 Hb_003935_090 Hb_001755_040--Hb_003935_090 Hb_010705_040 Hb_010705_040 Hb_001755_040--Hb_010705_040 Hb_000388_040--Hb_003767_030 Hb_012753_150 Hb_012753_150 Hb_000388_040--Hb_012753_150 Hb_000349_170 Hb_000349_170 Hb_000388_040--Hb_000349_170 Hb_000388_040--Hb_002218_050 Hb_010267_020 Hb_010267_020 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290 Hb_003767_030--Hb_000349_170 Hb_009421_090 Hb_009421_090 Hb_003767_030--Hb_009421_090 Hb_000283_090 Hb_000283_090 Hb_003767_030--Hb_000283_090 Hb_003767_030--Hb_010267_020 Hb_000809_220 Hb_000809_220 Hb_003767_030--Hb_000809_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.421251 21.0181 328.522 91.5124 0.381793 1.04801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.37786 9.60965 2.4021 1.79121 30.9128

CAGE analysis