Hb_028487_120

Information

Type -
Description -
Location Contig28487: 115816-117243
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11980g
description hypothetical protein
nr
ID XP_012072266.1
description PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]
swissprot
ID Q00423
description HMG-Y-related protein A OS=Glycine max PE=2 SV=1
trembl
ID A0A067KPL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04730 PE=3 SV=1
Gene Ontology
ID GO:0000786
description hmg-y-related protein b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29806: 115800-117003 , PASA_asmbl_29807: 115800-116938
cDNA
(Sanger)
(ID:Location)		 005_A04.ab1: 115805-116509 , 025_L04.ab1: 116233-117001 , 032_I15.ab1: 116457-116977

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_120 0.0 - - PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]
2 Hb_001279_050 0.119922848 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
3 Hb_008406_100 0.1393301549 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
4 Hb_022092_040 0.1436032682 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
5 Hb_000638_260 0.1437153851 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
6 Hb_000960_120 0.1529097318 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
7 Hb_024973_020 0.1534799589 - - Protein regulator of cytokinesis, putative [Ricinus communis]
8 Hb_001761_010 0.1572975804 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
9 Hb_012653_010 0.1641469504 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
10 Hb_002307_040 0.1693861857 - - DNA binding protein, putative [Ricinus communis]
11 Hb_003935_090 0.1744272907 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
12 Hb_000083_110 0.1754557541 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
13 Hb_002218_050 0.1760060754 - - SSXT family protein isoform 2, partial [Theobroma cacao]
14 Hb_000347_140 0.1872354016 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_000653_020 0.1873739991 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
16 Hb_002232_310 0.1912361375 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
17 Hb_173029_030 0.1962264848 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000345_410 0.1972222905 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
19 Hb_004218_050 0.2004817977 - - annexin [Manihot esculenta]
20 Hb_007545_110 0.2023443201 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_028487_120 Hb_028487_120 Hb_001279_050 Hb_001279_050 Hb_028487_120--Hb_001279_050 Hb_008406_100 Hb_008406_100 Hb_028487_120--Hb_008406_100 Hb_022092_040 Hb_022092_040 Hb_028487_120--Hb_022092_040 Hb_000638_260 Hb_000638_260 Hb_028487_120--Hb_000638_260 Hb_000960_120 Hb_000960_120 Hb_028487_120--Hb_000960_120 Hb_024973_020 Hb_024973_020 Hb_028487_120--Hb_024973_020 Hb_000748_100 Hb_000748_100 Hb_001279_050--Hb_000748_100 Hb_002307_040 Hb_002307_040 Hb_001279_050--Hb_002307_040 Hb_000367_240 Hb_000367_240 Hb_001279_050--Hb_000367_240 Hb_000069_400 Hb_000069_400 Hb_001279_050--Hb_000069_400 Hb_002221_010 Hb_002221_010 Hb_001279_050--Hb_002221_010 Hb_005162_130 Hb_005162_130 Hb_008406_100--Hb_005162_130 Hb_002007_280 Hb_002007_280 Hb_008406_100--Hb_002007_280 Hb_000345_410 Hb_000345_410 Hb_008406_100--Hb_000345_410 Hb_008406_100--Hb_024973_020 Hb_000365_210 Hb_000365_210 Hb_008406_100--Hb_000365_210 Hb_001501_070 Hb_001501_070 Hb_008406_100--Hb_001501_070 Hb_022092_040--Hb_000960_120 Hb_007545_110 Hb_007545_110 Hb_022092_040--Hb_007545_110 Hb_001761_010 Hb_001761_010 Hb_022092_040--Hb_001761_010 Hb_000260_610 Hb_000260_610 Hb_022092_040--Hb_000260_610 Hb_002218_050 Hb_002218_050 Hb_022092_040--Hb_002218_050 Hb_000347_140 Hb_000347_140 Hb_000638_260--Hb_000347_140 Hb_074792_010 Hb_074792_010 Hb_000638_260--Hb_074792_010 Hb_000638_260--Hb_000345_410 Hb_000638_260--Hb_008406_100 Hb_003430_040 Hb_003430_040 Hb_000638_260--Hb_003430_040 Hb_013344_010 Hb_013344_010 Hb_000960_120--Hb_013344_010 Hb_000960_120--Hb_001761_010 Hb_002811_210 Hb_002811_210 Hb_000960_120--Hb_002811_210 Hb_006060_010 Hb_006060_010 Hb_000960_120--Hb_006060_010 Hb_000960_120--Hb_008406_100 Hb_012653_010 Hb_012653_010 Hb_024973_020--Hb_012653_010 Hb_038044_010 Hb_038044_010 Hb_024973_020--Hb_038044_010 Hb_004218_050 Hb_004218_050 Hb_024973_020--Hb_004218_050 Hb_024973_020--Hb_001501_070 Hb_024973_020--Hb_001761_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4215 10.5319 195.327 26.6344 11.3648 5.97975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19858 0.482008 1.11297 8.25435 11.3254

CAGE analysis