Hb_011609_010

Information

Type -
Description -
Location Contig11609: 1519-10763
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15600g
description hypothetical protein
nr
ID XP_012077981.1
description PREDICTED: zinc transporter 5 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KL05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12986 PE=4 SV=1
Gene Ontology
ID GO:0016021
description zinc transporter 5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04938: 3197-10757 , PASA_asmbl_04939: 3184-10765
cDNA
(Sanger)
(ID:Location)		 001_N22.ab1: 3197-6611

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_010 0.0 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
2 Hb_000803_090 0.0741756477 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
3 Hb_001624_040 0.103048077 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
4 Hb_000008_390 0.1052031284 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
5 Hb_001621_110 0.1186218194 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
6 Hb_000062_360 0.1220604981 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
7 Hb_003529_180 0.1229525509 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
8 Hb_007777_010 0.1239250075 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
9 Hb_004725_030 0.1252958194 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
10 Hb_155025_010 0.1280469856 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
11 Hb_000189_390 0.1287939908 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
12 Hb_002600_130 0.1302548951 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
13 Hb_003747_050 0.1325639317 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
14 Hb_015026_020 0.1347398084 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
15 Hb_000212_300 0.1366914597 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
16 Hb_000139_220 0.1369079323 - - leucine rich repeat-containing protein, putative [Ricinus communis]
17 Hb_000211_040 0.1389224869 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
18 Hb_004267_060 0.1402125853 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_001369_030 0.1406042121 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
20 Hb_000424_070 0.1409839819 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_011609_010 Hb_011609_010 Hb_000803_090 Hb_000803_090 Hb_011609_010--Hb_000803_090 Hb_001624_040 Hb_001624_040 Hb_011609_010--Hb_001624_040 Hb_000008_390 Hb_000008_390 Hb_011609_010--Hb_000008_390 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360 Hb_003529_180 Hb_003529_180 Hb_011609_010--Hb_003529_180 Hb_003747_050 Hb_003747_050 Hb_000803_090--Hb_003747_050 Hb_000803_090--Hb_000008_390 Hb_000803_090--Hb_001624_040 Hb_002301_210 Hb_002301_210 Hb_000803_090--Hb_002301_210 Hb_000631_090 Hb_000631_090 Hb_000803_090--Hb_000631_090 Hb_001624_040--Hb_002301_210 Hb_000453_230 Hb_000453_230 Hb_001624_040--Hb_000453_230 Hb_004116_160 Hb_004116_160 Hb_001624_040--Hb_004116_160 Hb_000418_090 Hb_000418_090 Hb_001624_040--Hb_000418_090 Hb_000086_180 Hb_000086_180 Hb_000008_390--Hb_000086_180 Hb_006935_040 Hb_006935_040 Hb_000008_390--Hb_006935_040 Hb_000959_190 Hb_000959_190 Hb_000008_390--Hb_000959_190 Hb_001021_100 Hb_001021_100 Hb_000008_390--Hb_001021_100 Hb_007777_010 Hb_007777_010 Hb_001621_110--Hb_007777_010 Hb_004267_060 Hb_004267_060 Hb_001621_110--Hb_004267_060 Hb_004725_030 Hb_004725_030 Hb_001621_110--Hb_004725_030 Hb_000890_010 Hb_000890_010 Hb_001621_110--Hb_000890_010 Hb_000086_430 Hb_000086_430 Hb_001621_110--Hb_000086_430 Hb_001369_030 Hb_001369_030 Hb_000062_360--Hb_001369_030 Hb_000212_300 Hb_000212_300 Hb_000062_360--Hb_000212_300 Hb_001322_020 Hb_001322_020 Hb_000062_360--Hb_001322_020 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_003470_040 Hb_003470_040 Hb_000062_360--Hb_003470_040 Hb_002600_130 Hb_002600_130 Hb_003529_180--Hb_002600_130 Hb_000732_030 Hb_000732_030 Hb_003529_180--Hb_000732_030 Hb_003529_180--Hb_004725_030 Hb_000009_220 Hb_000009_220 Hb_003529_180--Hb_000009_220 Hb_000189_390 Hb_000189_390 Hb_003529_180--Hb_000189_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.48407 15.7307 38.55 11.9646 9.81448 7.63005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63002 2.93789 2.41349 5.43202 10.165

CAGE analysis