Hb_001621_110

Information

Type -
Description -
Location Contig1621: 155994-159533
Sequence    

Annotation

kegg
ID rcu:RCOM_1480090
description DNA binding protein, putative
nr
ID XP_012088807.1
description PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01424 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14629: 156398-157410 , PASA_asmbl_14632: 158850-158990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_110 0.0 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
2 Hb_007777_010 0.0805578536 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
3 Hb_004267_060 0.1026125207 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_004725_030 0.1095445676 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
5 Hb_000890_010 0.1122997337 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000086_430 0.1166940455 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
7 Hb_011609_010 0.1186218194 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
8 Hb_001369_030 0.1198978851 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
9 Hb_000045_160 0.1230543308 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
10 Hb_000640_190 0.1233043457 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
11 Hb_155025_010 0.1236400058 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
12 Hb_001396_070 0.1262597315 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005873_020 0.1262893738 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
14 Hb_004236_030 0.127152891 - - unknown [Lotus japonicus]
15 Hb_008165_030 0.1273514605 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
16 Hb_001558_060 0.1273672353 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
17 Hb_001009_120 0.1288925436 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
18 Hb_012305_140 0.1289188054 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
19 Hb_003925_060 0.1296732877 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
20 Hb_003747_050 0.1300113607 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]

Gene co-expression network

sample Hb_001621_110 Hb_001621_110 Hb_007777_010 Hb_007777_010 Hb_001621_110--Hb_007777_010 Hb_004267_060 Hb_004267_060 Hb_001621_110--Hb_004267_060 Hb_004725_030 Hb_004725_030 Hb_001621_110--Hb_004725_030 Hb_000890_010 Hb_000890_010 Hb_001621_110--Hb_000890_010 Hb_000086_430 Hb_000086_430 Hb_001621_110--Hb_000086_430 Hb_011609_010 Hb_011609_010 Hb_001621_110--Hb_011609_010 Hb_007777_010--Hb_004267_060 Hb_152910_010 Hb_152910_010 Hb_007777_010--Hb_152910_010 Hb_000045_160 Hb_000045_160 Hb_007777_010--Hb_000045_160 Hb_000640_190 Hb_000640_190 Hb_007777_010--Hb_000640_190 Hb_010287_030 Hb_010287_030 Hb_007777_010--Hb_010287_030 Hb_000260_770 Hb_000260_770 Hb_004267_060--Hb_000260_770 Hb_001369_030 Hb_001369_030 Hb_004267_060--Hb_001369_030 Hb_001009_120 Hb_001009_120 Hb_004267_060--Hb_001009_120 Hb_000062_360 Hb_000062_360 Hb_004267_060--Hb_000062_360 Hb_004267_060--Hb_000086_430 Hb_000139_220 Hb_000139_220 Hb_004725_030--Hb_000139_220 Hb_005656_080 Hb_005656_080 Hb_004725_030--Hb_005656_080 Hb_000077_120 Hb_000077_120 Hb_004725_030--Hb_000077_120 Hb_013405_150 Hb_013405_150 Hb_004725_030--Hb_013405_150 Hb_026234_010 Hb_026234_010 Hb_004725_030--Hb_026234_010 Hb_006132_040 Hb_006132_040 Hb_000890_010--Hb_006132_040 Hb_000890_010--Hb_013405_150 Hb_005610_080 Hb_005610_080 Hb_000890_010--Hb_005610_080 Hb_000890_010--Hb_000077_120 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010 Hb_000048_080 Hb_000048_080 Hb_000086_430--Hb_000048_080 Hb_000086_430--Hb_001369_030 Hb_001500_120 Hb_001500_120 Hb_000086_430--Hb_001500_120 Hb_000086_430--Hb_001009_120 Hb_001558_060 Hb_001558_060 Hb_000086_430--Hb_001558_060 Hb_004225_060 Hb_004225_060 Hb_000086_430--Hb_004225_060 Hb_000803_090 Hb_000803_090 Hb_011609_010--Hb_000803_090 Hb_001624_040 Hb_001624_040 Hb_011609_010--Hb_001624_040 Hb_000008_390 Hb_000008_390 Hb_011609_010--Hb_000008_390 Hb_011609_010--Hb_000062_360 Hb_003529_180 Hb_003529_180 Hb_011609_010--Hb_003529_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.34062 5.72803 8.04248 2.92822 1.55198 2.4394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.454185 1.2138 0.882967 1.66234 2.51445

CAGE analysis