Hb_171619_010

Information

Type -
Description -
Location Contig171619: 67-222
Sequence    

Annotation

kegg
ID rcu:RCOM_1431330
description protein binding protein, putative
nr
ID XP_002512363.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RF44
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1431330 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171619_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_124961_010 0.1042377136 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
3 Hb_170532_010 0.1122265664 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
4 Hb_000160_150 0.1396567803 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
5 Hb_003297_020 0.1882468812 - - unknown [Populus trichocarpa x Populus deltoides]
6 Hb_101020_010 0.1934637581 - - -
7 Hb_006230_040 0.2034698372 - - kinase, putative [Ricinus communis]
8 Hb_004570_050 0.2061192123 - - kinase, putative [Ricinus communis]
9 Hb_002708_020 0.2080759216 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
10 Hb_002783_010 0.2090236949 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
11 Hb_007136_020 0.2138282903 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
12 Hb_034667_020 0.2142751799 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006816_340 0.2195010532 - - -
14 Hb_000193_150 0.2217393936 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
15 Hb_008246_030 0.2249682108 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
16 Hb_012184_050 0.2284517178 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
17 Hb_121729_020 0.2293006587 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000140_490 0.2348292275 - - BnaC01g32630D [Brassica napus]
19 Hb_000045_320 0.2368679047 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
20 Hb_036693_010 0.2375088143 - - -

Gene co-expression network

sample Hb_171619_010 Hb_171619_010 Hb_124961_010 Hb_124961_010 Hb_171619_010--Hb_124961_010 Hb_170532_010 Hb_170532_010 Hb_171619_010--Hb_170532_010 Hb_000160_150 Hb_000160_150 Hb_171619_010--Hb_000160_150 Hb_003297_020 Hb_003297_020 Hb_171619_010--Hb_003297_020 Hb_101020_010 Hb_101020_010 Hb_171619_010--Hb_101020_010 Hb_006230_040 Hb_006230_040 Hb_171619_010--Hb_006230_040 Hb_124961_010--Hb_170532_010 Hb_004570_050 Hb_004570_050 Hb_124961_010--Hb_004570_050 Hb_124961_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_124961_010--Hb_007136_020 Hb_124961_010--Hb_101020_010 Hb_170532_010--Hb_004570_050 Hb_170532_010--Hb_000160_150 Hb_002783_010 Hb_002783_010 Hb_170532_010--Hb_002783_010 Hb_078568_010 Hb_078568_010 Hb_170532_010--Hb_078568_010 Hb_002708_020 Hb_002708_020 Hb_000160_150--Hb_002708_020 Hb_027402_090 Hb_027402_090 Hb_000160_150--Hb_027402_090 Hb_008246_030 Hb_008246_030 Hb_000160_150--Hb_008246_030 Hb_002686_330 Hb_002686_330 Hb_000160_150--Hb_002686_330 Hb_070385_010 Hb_070385_010 Hb_003297_020--Hb_070385_010 Hb_003297_020--Hb_007136_020 Hb_003297_020--Hb_101020_010 Hb_002249_110 Hb_002249_110 Hb_003297_020--Hb_002249_110 Hb_003297_020--Hb_124961_010 Hb_001767_120 Hb_001767_120 Hb_003297_020--Hb_001767_120 Hb_009693_030 Hb_009693_030 Hb_101020_010--Hb_009693_030 Hb_001916_060 Hb_001916_060 Hb_101020_010--Hb_001916_060 Hb_101020_010--Hb_000160_150 Hb_101020_010--Hb_007136_020 Hb_006230_040--Hb_124961_010 Hb_005155_020 Hb_005155_020 Hb_006230_040--Hb_005155_020 Hb_006230_040--Hb_170532_010 Hb_004994_130 Hb_004994_130 Hb_006230_040--Hb_004994_130 Hb_006230_040--Hb_004570_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1122.33 771.806 1386.69 193.635 813.509 2690.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.005 203.428 56.17 114.148 101.3

CAGE analysis