Hb_004994_130

Information

Type transcription factor
Description TF Family: MYB
Location Contig4994: 75346-77919
Sequence    

Annotation

kegg
ID pop:POPTR_0014s07520g
description POPTRDRAFT_572206; hypothetical protein
nr
ID XP_012083843.1
description PREDICTED: myb-like protein M [Jatropha curcas]
swissprot
ID Q9S7G7
description Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1
trembl
ID A0A067JXH6
description MYB family protein OS=Jatropha curcas GN=JCGZ_14442 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 3r-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_130 0.0 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
2 Hb_010315_070 0.1713078316 - - -
3 Hb_000181_410 0.2190193462 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006230_040 0.2206056197 - - kinase, putative [Ricinus communis]
5 Hb_163508_010 0.2286795741 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
6 Hb_000189_390 0.2355198492 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
7 Hb_007603_020 0.2377707208 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
8 Hb_003119_050 0.2403431192 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
9 Hb_129459_010 0.2418966647 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
10 Hb_076233_030 0.2427213521 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
11 Hb_003529_180 0.2464501579 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
12 Hb_001767_040 0.247849606 - - dehydroascorbate reductase, putative [Ricinus communis]
13 Hb_011161_030 0.247893549 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
14 Hb_004570_050 0.2484033025 - - kinase, putative [Ricinus communis]
15 Hb_000107_470 0.249762855 - - cellulose synthase, putative [Ricinus communis]
16 Hb_000189_430 0.2531310575 - - unnamed protein product [Vitis vinifera]
17 Hb_074184_010 0.2535493315 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
18 Hb_002600_130 0.2553132403 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
19 Hb_061466_020 0.2585155832 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_182249_010 0.2618543645 - - -

Gene co-expression network

sample Hb_004994_130 Hb_004994_130 Hb_010315_070 Hb_010315_070 Hb_004994_130--Hb_010315_070 Hb_000181_410 Hb_000181_410 Hb_004994_130--Hb_000181_410 Hb_006230_040 Hb_006230_040 Hb_004994_130--Hb_006230_040 Hb_163508_010 Hb_163508_010 Hb_004994_130--Hb_163508_010 Hb_000189_390 Hb_000189_390 Hb_004994_130--Hb_000189_390 Hb_007603_020 Hb_007603_020 Hb_004994_130--Hb_007603_020 Hb_002370_040 Hb_002370_040 Hb_010315_070--Hb_002370_040 Hb_100964_010 Hb_100964_010 Hb_010315_070--Hb_100964_010 Hb_010315_070--Hb_007603_020 Hb_010315_070--Hb_000181_410 Hb_000101_220 Hb_000101_220 Hb_010315_070--Hb_000101_220 Hb_000107_470 Hb_000107_470 Hb_000181_410--Hb_000107_470 Hb_000181_410--Hb_007603_020 Hb_000904_130 Hb_000904_130 Hb_000181_410--Hb_000904_130 Hb_000152_510 Hb_000152_510 Hb_000181_410--Hb_000152_510 Hb_163839_010 Hb_163839_010 Hb_000181_410--Hb_163839_010 Hb_171619_010 Hb_171619_010 Hb_006230_040--Hb_171619_010 Hb_124961_010 Hb_124961_010 Hb_006230_040--Hb_124961_010 Hb_005155_020 Hb_005155_020 Hb_006230_040--Hb_005155_020 Hb_170532_010 Hb_170532_010 Hb_006230_040--Hb_170532_010 Hb_004570_050 Hb_004570_050 Hb_006230_040--Hb_004570_050 Hb_027402_040 Hb_027402_040 Hb_163508_010--Hb_027402_040 Hb_003119_050 Hb_003119_050 Hb_163508_010--Hb_003119_050 Hb_000540_220 Hb_000540_220 Hb_163508_010--Hb_000540_220 Hb_007188_060 Hb_007188_060 Hb_163508_010--Hb_007188_060 Hb_074184_010 Hb_074184_010 Hb_163508_010--Hb_074184_010 Hb_000099_090 Hb_000099_090 Hb_163508_010--Hb_000099_090 Hb_076233_030 Hb_076233_030 Hb_000189_390--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_000189_390--Hb_014497_030 Hb_000803_090 Hb_000803_090 Hb_000189_390--Hb_000803_090 Hb_011609_010 Hb_011609_010 Hb_000189_390--Hb_011609_010 Hb_003529_180 Hb_003529_180 Hb_000189_390--Hb_003529_180 Hb_124951_010 Hb_124951_010 Hb_000189_390--Hb_124951_010 Hb_002035_090 Hb_002035_090 Hb_007603_020--Hb_002035_090 Hb_001767_040 Hb_001767_040 Hb_007603_020--Hb_001767_040 Hb_007603_020--Hb_100964_010 Hb_001622_010 Hb_001622_010 Hb_007603_020--Hb_001622_010 Hb_000165_140 Hb_000165_140 Hb_007603_020--Hb_000165_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.084322 0.143164 0.288264 0.0562088 0.109739 0.0991907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0423012 0.0179041 0

CAGE analysis