Hb_000107_470

Information

Type -
Description -
Location Contig107: 336546-340425
Sequence    

Annotation

kegg
ID rcu:RCOM_1565510
description cellulose synthase, putative (EC:2.4.1.12)
nr
ID XP_002514401.1
description cellulose synthase, putative [Ricinus communis]
swissprot
ID Q9SZL9
description Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1
trembl
ID B9RKY2
description Cellulose synthase, putative OS=Ricinus communis GN=RCOM_1565510 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase-like protein d4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_470 0.0 - - cellulose synthase, putative [Ricinus communis]
2 Hb_000181_410 0.2008893765 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000544_160 0.2401045447 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
4 Hb_004994_130 0.249762855 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
5 Hb_004453_100 0.2519449113 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006921_040 0.2568563225 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
7 Hb_007603_020 0.2582979155 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
8 Hb_010712_070 0.2628054441 - - Galactoside 2-alpha-L-fucosyltransferase [Aegilops tauschii]
9 Hb_004342_020 0.2836560286 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
10 Hb_003494_010 0.2860500247 - - hypothetical protein JCGZ_19838 [Jatropha curcas]
11 Hb_003038_250 0.2894999078 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
12 Hb_000820_160 0.2897384469 - - -
13 Hb_001767_040 0.2906731272 - - dehydroascorbate reductase, putative [Ricinus communis]
14 Hb_019715_010 0.2913597252 - - carbon catabolite repressor protein, putative [Ricinus communis]
15 Hb_032990_020 0.2917784848 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000413_290 0.2925874263 - - -
17 Hb_006831_100 0.2940540386 - - snRNA-activating protein complex subunit, putative [Ricinus communis]
18 Hb_163839_010 0.3025213444 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_002232_300 0.3047545497 - - Squalene monooxygenase, putative [Ricinus communis]
20 Hb_008725_060 0.3099685162 - - Protein COBRA precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_470 Hb_000107_470 Hb_000181_410 Hb_000181_410 Hb_000107_470--Hb_000181_410 Hb_000544_160 Hb_000544_160 Hb_000107_470--Hb_000544_160 Hb_004994_130 Hb_004994_130 Hb_000107_470--Hb_004994_130 Hb_004453_100 Hb_004453_100 Hb_000107_470--Hb_004453_100 Hb_006921_040 Hb_006921_040 Hb_000107_470--Hb_006921_040 Hb_007603_020 Hb_007603_020 Hb_000107_470--Hb_007603_020 Hb_000181_410--Hb_007603_020 Hb_000181_410--Hb_004994_130 Hb_000904_130 Hb_000904_130 Hb_000181_410--Hb_000904_130 Hb_000152_510 Hb_000152_510 Hb_000181_410--Hb_000152_510 Hb_163839_010 Hb_163839_010 Hb_000181_410--Hb_163839_010 Hb_078897_010 Hb_078897_010 Hb_000544_160--Hb_078897_010 Hb_010712_070 Hb_010712_070 Hb_000544_160--Hb_010712_070 Hb_002722_010 Hb_002722_010 Hb_000544_160--Hb_002722_010 Hb_000544_160--Hb_006921_040 Hb_001366_120 Hb_001366_120 Hb_000544_160--Hb_001366_120 Hb_010315_070 Hb_010315_070 Hb_004994_130--Hb_010315_070 Hb_006230_040 Hb_006230_040 Hb_004994_130--Hb_006230_040 Hb_163508_010 Hb_163508_010 Hb_004994_130--Hb_163508_010 Hb_000189_390 Hb_000189_390 Hb_004994_130--Hb_000189_390 Hb_004994_130--Hb_007603_020 Hb_007904_250 Hb_007904_250 Hb_004453_100--Hb_007904_250 Hb_000197_200 Hb_000197_200 Hb_004453_100--Hb_000197_200 Hb_004342_020 Hb_004342_020 Hb_004453_100--Hb_004342_020 Hb_003038_250 Hb_003038_250 Hb_004453_100--Hb_003038_250 Hb_023765_020 Hb_023765_020 Hb_004453_100--Hb_023765_020 Hb_006921_040--Hb_001366_120 Hb_002102_020 Hb_002102_020 Hb_006921_040--Hb_002102_020 Hb_010174_080 Hb_010174_080 Hb_006921_040--Hb_010174_080 Hb_006921_040--Hb_000181_410 Hb_002035_090 Hb_002035_090 Hb_007603_020--Hb_002035_090 Hb_001767_040 Hb_001767_040 Hb_007603_020--Hb_001767_040 Hb_100964_010 Hb_100964_010 Hb_007603_020--Hb_100964_010 Hb_001622_010 Hb_001622_010 Hb_007603_020--Hb_001622_010 Hb_000165_140 Hb_000165_140 Hb_007603_020--Hb_000165_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0309464 0.0139532 0.0726444 0.0242506 0.0271904 0.010404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0386557 0.00399752 0

CAGE analysis