Hb_002035_090

Information

Type -
Description -
Location Contig2035: 99911-101263
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20849: 100041-100510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002035_090 0.0 - - -
2 Hb_006615_100 0.1765425697 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
3 Hb_002035_080 0.1841968618 - - unnamed protein product [Vitis vinifera]
4 Hb_007603_020 0.1864680492 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
5 Hb_026206_020 0.1920434388 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
6 Hb_007680_020 0.2010089927 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_000997_410 0.2115765849 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
8 Hb_010531_050 0.2117257814 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
9 Hb_133748_010 0.2172902737 - - -
10 Hb_001622_010 0.2175068057 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_100964_010 0.2189627966 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001195_150 0.2199307658 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
13 Hb_000201_040 0.2212710174 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
14 Hb_005122_060 0.2251007131 - - unnamed protein product [Vitis vinifera]
15 Hb_040255_010 0.2262197334 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
16 Hb_000281_010 0.2271856246 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
17 Hb_010128_070 0.2273112254 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_002863_100 0.2292188583 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
19 Hb_105085_010 0.2294791185 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
20 Hb_007904_080 0.2309349322 - - hypothetical protein JCGZ_17880 [Jatropha curcas]

Gene co-expression network

sample Hb_002035_090 Hb_002035_090 Hb_006615_100 Hb_006615_100 Hb_002035_090--Hb_006615_100 Hb_002035_080 Hb_002035_080 Hb_002035_090--Hb_002035_080 Hb_007603_020 Hb_007603_020 Hb_002035_090--Hb_007603_020 Hb_026206_020 Hb_026206_020 Hb_002035_090--Hb_026206_020 Hb_007680_020 Hb_007680_020 Hb_002035_090--Hb_007680_020 Hb_000997_410 Hb_000997_410 Hb_002035_090--Hb_000997_410 Hb_006615_100--Hb_007680_020 Hb_010128_070 Hb_010128_070 Hb_006615_100--Hb_010128_070 Hb_000281_010 Hb_000281_010 Hb_006615_100--Hb_000281_010 Hb_001195_150 Hb_001195_150 Hb_006615_100--Hb_001195_150 Hb_006615_100--Hb_000997_410 Hb_002804_050 Hb_002804_050 Hb_006615_100--Hb_002804_050 Hb_000193_140 Hb_000193_140 Hb_002035_080--Hb_000193_140 Hb_135442_010 Hb_135442_010 Hb_002035_080--Hb_135442_010 Hb_000334_180 Hb_000334_180 Hb_002035_080--Hb_000334_180 Hb_133748_010 Hb_133748_010 Hb_002035_080--Hb_133748_010 Hb_008778_010 Hb_008778_010 Hb_002035_080--Hb_008778_010 Hb_001767_040 Hb_001767_040 Hb_007603_020--Hb_001767_040 Hb_000181_410 Hb_000181_410 Hb_007603_020--Hb_000181_410 Hb_100964_010 Hb_100964_010 Hb_007603_020--Hb_100964_010 Hb_001622_010 Hb_001622_010 Hb_007603_020--Hb_001622_010 Hb_000165_140 Hb_000165_140 Hb_007603_020--Hb_000165_140 Hb_006649_080 Hb_006649_080 Hb_026206_020--Hb_006649_080 Hb_033187_050 Hb_033187_050 Hb_026206_020--Hb_033187_050 Hb_009620_030 Hb_009620_030 Hb_026206_020--Hb_009620_030 Hb_000479_150 Hb_000479_150 Hb_026206_020--Hb_000479_150 Hb_011218_070 Hb_011218_070 Hb_026206_020--Hb_011218_070 Hb_008554_120 Hb_008554_120 Hb_026206_020--Hb_008554_120 Hb_005122_060 Hb_005122_060 Hb_007680_020--Hb_005122_060 Hb_007680_020--Hb_001195_150 Hb_000307_250 Hb_000307_250 Hb_007680_020--Hb_000307_250 Hb_007257_050 Hb_007257_050 Hb_007680_020--Hb_007257_050 Hb_007680_020--Hb_000281_010 Hb_001731_020 Hb_001731_020 Hb_000997_410--Hb_001731_020 Hb_114984_010 Hb_114984_010 Hb_000997_410--Hb_114984_010 Hb_000261_290 Hb_000261_290 Hb_000997_410--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_000997_410--Hb_006588_050 Hb_000997_410--Hb_009620_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03869 0.664174 0.248026 0.275436 0.49647 0.588636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.360854 0.220478 0.0802199

CAGE analysis