Hb_008778_010

Information

Type -
Description -
Location Contig8778: 48-722
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008778_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000334_180 0.1763140852 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
3 Hb_004899_060 0.1944940493 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
4 Hb_002035_080 0.2083774145 - - unnamed protein product [Vitis vinifera]
5 Hb_005976_050 0.2126076138 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
6 Hb_089206_010 0.2175789065 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
7 Hb_000566_030 0.2214442059 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
8 Hb_002863_120 0.2242428545 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
9 Hb_001366_120 0.2243336509 - - unknown [Zea mays]
10 Hb_001221_140 0.2250066065 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000853_400 0.2250519671 - - PREDICTED: CTP synthase [Jatropha curcas]
12 Hb_183443_010 0.2289612394 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
13 Hb_000133_070 0.2318539859 - - -
14 Hb_002102_030 0.2370880489 - - -
15 Hb_001882_130 0.2415800324 transcription factor TF Family: mTERF hypothetical protein VITISV_028996 [Vitis vinifera]
16 Hb_090497_010 0.2427402189 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
17 Hb_000270_520 0.2472300387 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
18 Hb_008494_050 0.2475050185 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
19 Hb_004097_120 0.2482865665 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
20 Hb_005548_020 0.2509014177 - - hypothetical protein JCGZ_05605 [Jatropha curcas]

Gene co-expression network

sample Hb_008778_010 Hb_008778_010 Hb_000334_180 Hb_000334_180 Hb_008778_010--Hb_000334_180 Hb_004899_060 Hb_004899_060 Hb_008778_010--Hb_004899_060 Hb_002035_080 Hb_002035_080 Hb_008778_010--Hb_002035_080 Hb_005976_050 Hb_005976_050 Hb_008778_010--Hb_005976_050 Hb_089206_010 Hb_089206_010 Hb_008778_010--Hb_089206_010 Hb_000566_030 Hb_000566_030 Hb_008778_010--Hb_000566_030 Hb_000334_180--Hb_000566_030 Hb_007380_040 Hb_007380_040 Hb_000334_180--Hb_007380_040 Hb_183443_010 Hb_183443_010 Hb_000334_180--Hb_183443_010 Hb_000334_180--Hb_002035_080 Hb_001636_020 Hb_001636_020 Hb_000334_180--Hb_001636_020 Hb_001366_120 Hb_001366_120 Hb_004899_060--Hb_001366_120 Hb_004899_060--Hb_005976_050 Hb_003688_160 Hb_003688_160 Hb_004899_060--Hb_003688_160 Hb_001143_190 Hb_001143_190 Hb_004899_060--Hb_001143_190 Hb_031862_130 Hb_031862_130 Hb_004899_060--Hb_031862_130 Hb_008695_140 Hb_008695_140 Hb_004899_060--Hb_008695_140 Hb_000193_140 Hb_000193_140 Hb_002035_080--Hb_000193_140 Hb_135442_010 Hb_135442_010 Hb_002035_080--Hb_135442_010 Hb_002035_090 Hb_002035_090 Hb_002035_080--Hb_002035_090 Hb_133748_010 Hb_133748_010 Hb_002035_080--Hb_133748_010 Hb_010427_010 Hb_010427_010 Hb_005976_050--Hb_010427_010 Hb_000212_310 Hb_000212_310 Hb_005976_050--Hb_000212_310 Hb_000031_150 Hb_000031_150 Hb_005976_050--Hb_000031_150 Hb_007904_160 Hb_007904_160 Hb_005976_050--Hb_007904_160 Hb_000933_060 Hb_000933_060 Hb_005976_050--Hb_000933_060 Hb_000330_100 Hb_000330_100 Hb_005976_050--Hb_000330_100 Hb_089206_010--Hb_183443_010 Hb_063943_010 Hb_063943_010 Hb_089206_010--Hb_063943_010 Hb_000357_120 Hb_000357_120 Hb_089206_010--Hb_000357_120 Hb_089206_010--Hb_003688_160 Hb_052689_010 Hb_052689_010 Hb_089206_010--Hb_052689_010 Hb_004097_120 Hb_004097_120 Hb_089206_010--Hb_004097_120 Hb_001781_020 Hb_001781_020 Hb_000566_030--Hb_001781_020 Hb_001021_070 Hb_001021_070 Hb_000566_030--Hb_001021_070 Hb_001221_140 Hb_001221_140 Hb_000566_030--Hb_001221_140 Hb_000366_200 Hb_000366_200 Hb_000566_030--Hb_000366_200 Hb_004411_030 Hb_004411_030 Hb_000566_030--Hb_004411_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6864 6.75245 5.29796 14.1817 6.65295 9.47663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 15.4042 13.3818 1.5996

CAGE analysis